View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_high_12 (Length: 344)
Name: NF1700_high_12
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 14741904 - 14742232
Alignment:
| Q |
11 |
atgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcagcattggacagctgaagcaaca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14741904 |
atgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcaacattggacagctgaagcaaca |
14742003 |
T |
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| Q |
111 |
aaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14742004 |
aaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaa-tattaaatttgaacacaactttgcaaaataaaaatgatgaaccaa |
14742102 |
T |
|
| Q |
211 |
cctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatgagcacgttgcagcggcttcttagatcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742103 |
cctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagcttattactcatttgcttatgagcacgttgcagcggcttcttagatcc |
14742202 |
T |
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| Q |
311 |
agtcggagcattctcccagcctttgcttct |
340 |
Q |
| |
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||||||||||||||||| ||||||| |||| |
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| T |
14742203 |
agtcggagcattctccctgcctttgtttct |
14742232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 14734929 - 14735200
Alignment:
| Q |
11 |
atgaaaataatgggtgattctttcacgaacctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcagcattggacagctgaagcaaca |
110 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| ||| ||||||| | ||||||| |
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| T |
14734929 |
atgaaaataatgggtgattctttgacgaacctgtactgtgcaatgaccgttgttttgagacttctcaaagccgtatcaatcttggacaagtagagcaaca |
14735028 |
T |
|
| Q |
111 |
aaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaaatattaaatttaaacacaactttgcaaaataaaaatgatgaaccaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||| |
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| T |
14735029 |
aaaattaaatgcataagttaatcttctgatatatttcttatgataaccatacaa-tataaaatttaaacacaactctgcaaaacaaaaatgatgaaccaa |
14735127 |
T |
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| Q |
211 |
cctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcatttgcttatg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14735128 |
cctcagtacttaattctctagtcttgtttgcataagtggcttctagagcaagctttttactcaattgcttatg |
14735200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 29467453 - 29467226
Alignment:
| Q |
39 |
acctgcactgtgcaatcattgttgttttgagacttctcaaagccgtctcagcattggacagctgaagcaacaaaaattaaatgcataagttaatcttctg |
138 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||| | ||| | || |||||||| | |||||||| ||||||||| || |||| | |||| |
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| T |
29467453 |
acctgcactgtgaaatcgctgttgttttgagacttctcaaagccatatcaaccttagacagctggaacaacaaaagttaaatgcacaaattaaccgtctg |
29467354 |
T |
|
| Q |
139 |
atatatttcttatgataaccatacaaatatta-aatttaaacacaactttgcaaaataaaaatgatgaaccaacctcagtacttaattctctagtcttgt |
237 |
Q |
| |
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| ||| ||||| | | ||||| | |||| | |||||||||| || || || |||||| |||||||||||||||| |||||||| |||||| | | |
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| T |
29467353 |
aaatacttcttccaagtaacatac-atcattagattttaaacacagctctg---aaaaaaaataatgaaccaacctcagtgcttaattccctagtcatat |
29467258 |
T |
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| Q |
238 |
ttgcataagtggcttctagagcaagcttttta |
269 |
Q |
| |
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| |||||||| |||||| |||||||| ||||| |
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|
| T |
29467257 |
tggcataagttgcttcttgagcaagcctttta |
29467226 |
T |
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