View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_high_13 (Length: 342)
Name: NF1700_high_13
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 3698062 - 3698387
Alignment:
| Q |
6 |
cagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttagaatgg |
105 |
Q |
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| T |
3698062 |
cagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgtaacaaagaagattttcctgaagatgagtttaagaaagcatttagaatgg |
3698161 |
T |
|
| Q |
106 |
gaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagc |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698162 |
gaaaatcaacttttgatttgatttgtgaagaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagc |
3698261 |
T |
|
| Q |
206 |
tgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtt |
305 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698262 |
tgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtt |
3698361 |
T |
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| Q |
306 |
tgcactgctattaaaactgttcttat |
331 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3698362 |
tgcactgctattaaaactgttcttat |
3698387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 331
Target Start/End: Original strand, 3701750 - 3702075
Alignment:
| Q |
6 |
cagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttagaatgg |
105 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701750 |
cagagaaggctatgggtgaaggatcgttccggggcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttagaatgg |
3701849 |
T |
|
| Q |
106 |
gaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagc |
205 |
Q |
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||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701850 |
gaaaatcaacttttgattttatttgtgaaaaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagagtagc |
3701949 |
T |
|
| Q |
206 |
tgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtt |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701950 |
tgtttgtctatggagattagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagtt |
3702049 |
T |
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| Q |
306 |
tgcactgctattaaaactgttcttat |
331 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3702050 |
tgcactgctattaaaactgttcttat |
3702075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 52251470 - 52251370
Alignment:
| Q |
207 |
gtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagttt |
306 |
Q |
| |
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|||||| | |||||||| || || ||||||||||| || | |||||||| ||||| ||||| |||||||| || |||||||| || |||||||| |||| |
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| T |
52251470 |
gtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagctggttcttgaggttt |
52251371 |
T |
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| Q |
307 |
g |
307 |
Q |
| |
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|
| T |
52251370 |
g |
52251370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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