View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_high_20 (Length: 298)
Name: NF1700_high_20
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_high_20 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 17546444 - 17546690
Alignment:
| Q |
16 |
atcaattcattatttcagaaaattgcacgaaaattaggtaccccaaaggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaa |
115 |
Q |
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| T |
17546444 |
atcaattcattatttcagaaaattgcacgaaaattaggtaccccaaaggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaa |
17546543 |
T |
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| Q |
116 |
agggaagtaatcctgacgttttcaagattaaataaaagtccttccaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccat |
215 |
Q |
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| T |
17546544 |
agggaagtaatcctaacgttttcaagattaaataaaagtccttccaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccat |
17546643 |
T |
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| Q |
216 |
ctttgattgcagagaagccttaagcaactttgaaccctgttagaacc |
262 |
Q |
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| T |
17546644 |
ctttgattgcagagaagccttaagcaactttgaaccctgttagaacc |
17546690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 17016007 - 17016251
Alignment:
| Q |
16 |
atcaattcattatttcagaaaattgcacgaaaattaggtaccccaaaggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaa |
115 |
Q |
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| T |
17016007 |
atcaattcattatttcagaaaattgcacgaaaattaggtaccccaaaggaacaaccgccaaaaaacaaaatgacatagttttaagtacacttttatcaaa |
17016106 |
T |
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| Q |
116 |
agggaagtaatcctgacgttttcaagattaaataaaagtccttccaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccat |
215 |
Q |
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| T |
17016107 |
agggaagtaatcctgacgttttcaagattaaatagaagtcattcaaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaataccat |
17016206 |
T |
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| Q |
216 |
ctttgattgcagagaagccttaagcaactttgaaccctgttagaa |
260 |
Q |
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| T |
17016207 |
ctttgattgcagagaagccttaagcaactttgaaccctgttagaa |
17016251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 17523053 - 17522994
Alignment:
| Q |
186 |
cttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
245 |
Q |
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| T |
17523053 |
cttcttgagaaaaacacttgtcaagaccatcttggattgcagagaagccttcagcaactt |
17522994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 13733 - 13649
Alignment:
| Q |
16 |
atcaattcattatttcagaaaattgcacgaaaattaggtaccccaaaggaacaaccgccaaaaaacaaaatgacatagttttaag |
100 |
Q |
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| T |
13733 |
atcaattcattatttcagaaaattgcacgaaaattaggtaccccaaaggaacaaccgccaaaaaacaaaatgacatagttttaag |
13649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 52145000 - 52145071
Alignment:
| Q |
174 |
atatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
245 |
Q |
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| T |
52145000 |
atatcaattttccttcttgaggaaaacacttgtcaataccattttggattgcagagaagcctttagcaactt |
52145071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 52152460 - 52152517
Alignment:
| Q |
184 |
tccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagca |
241 |
Q |
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| T |
52152460 |
tccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagca |
52152517 |
T |
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