View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_high_34 (Length: 225)
Name: NF1700_high_34
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 45112965 - 45113163
Alignment:
| Q |
12 |
ttatactgtggtaaaataaggataaattatggttgcggactgcaatttaaaactattggagcaggcggagtagtgaaaagtaaaacctagccgctctgct |
111 |
Q |
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| T |
45112965 |
ttatactgtggtaaaataaggataaattatggttgcggactgcaatttaaaactattggagcaggcggagtagtgaaaagtaaaacctagccgctctgct |
45113064 |
T |
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| Q |
112 |
cctaggaatgtaatcacactgtccgacctttataaatctagcctgtttttgttttacattttactcggtctttcttcagatttcggtttctattttcac |
210 |
Q |
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| T |
45113065 |
cctaggaatgtaatcacactgtccgacctttataaatctagcctgtttttgttttacattttactcggtctttcttcagatttcggtttctattttcac |
45113163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 45129886 - 45130064
Alignment:
| Q |
20 |
tggtaaaataaggataaattatggttgcggactgcaatttaaaactattggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaa |
119 |
Q |
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| T |
45129886 |
tggtaaaataagggaaaattatggttgcggattgcaatttaaaactactggagcaggcggagtagtgaaaagtaaaacctagccgctctgctcctaggaa |
45129985 |
T |
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| Q |
120 |
tgtaatcacactgtccgacctttataaatctagcctgtttttgttttacattttactcggtctttcttcagatttcggtttctatttt |
207 |
Q |
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| T |
45129986 |
tgtagtcacattg-------ttcataaatctaggctgtttttgttttacattttact--gtctttctttagatttcggtttctatttt |
45130064 |
T |
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