View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1700_low_1 (Length: 722)
Name: NF1700_low_1
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_1 |
 | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 672; Significance: 0; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 16 - 707
Target Start/End: Original strand, 36024955 - 36025646
Alignment:
| Q |
16 |
aggttaacattcttgttctgcatatattaattacataaaatttatgaccaagattgtagaacaagaaaggaacataaattatttcaaaaagtgataaatc |
115 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36024955 |
aggtcaacattcttgttgtgcatatattaattacataaaatttatgaccaagattgtagaacaagaaaggaacataaattatttcaaaaagtgataaatc |
36025054 |
T |
|
| Q |
116 |
aaagacagagagaagataatgaatgttttaaacttctattttattcatatatagaattaaaaaatagaaaacaaaagatgaacatgatttgaagtagtta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025055 |
aaagacagagagaagataatgaatgttttaaacttctattttattcatatatagaattaaaaaatagaaaacaaaagatgaacatgatttgaagtagtta |
36025154 |
T |
|
| Q |
216 |
tatatattaaaactttggaaacagagtcatgacatgaataaaagatgtataatttattttatttacttgtgattttgagagtaccacccagctaaattgg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36025155 |
tatatattaaaactttggaaacagagtcatgacatgaataaaagatgtataatttattttatttacttgtaattttgagagtaccacccagctaaattgg |
36025254 |
T |
|
| Q |
316 |
cagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttttcaaaagctaacatataacttcctttctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025255 |
cagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttttcaaaagctaacatataacttcctttctg |
36025354 |
T |
|
| Q |
416 |
attcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcac |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025355 |
attcctcacatgtgatggatctatttcatagaaaacaggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcac |
36025454 |
T |
|
| Q |
516 |
cattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025455 |
cattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaa |
36025554 |
T |
|
| Q |
616 |
gctcattgtcatctataaatgttataactttcttgctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025555 |
gctcattgtcatctataaatgttataactttcttgctcagagcttcataaagatggcttgtgaagtttctacgagtatcctcaccacgaaag |
36025646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 277 - 707
Target Start/End: Original strand, 36004455 - 36004885
Alignment:
| Q |
277 |
tttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttg |
376 |
Q |
| |
|
||||| ||| ||||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||| | || | |||||| |||||||||||||| | |
|
|
| T |
36004455 |
tttacctgtaattttgagagtgccaccctgctaaattggctgcttcagttagagcatctttccatttctttaacatttctttgttctgcttcaaatctcg |
36004554 |
T |
|
| Q |
377 |
ttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatct |
476 |
Q |
| |
|
| |||||||| |||| ||| | ||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||| |
|
|
| T |
36004555 |
tgcatgttttgcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatct |
36004654 |
T |
|
| Q |
477 |
ttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatag |
576 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
36004655 |
ttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatag |
36004754 |
T |
|
| Q |
577 |
ctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttcttgctcagagcttcataaatatggcttgt |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
36004755 |
ctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataattttcttgctcagagcttcataaagatggcttgt |
36004854 |
T |
|
| Q |
677 |
gaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||| ||||||| |||||||||||||| |||| |
|
|
| T |
36004855 |
gaactttctaccagtatcctcaccacaaaag |
36004885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 270 - 708
Target Start/End: Original strand, 36017111 - 36017552
Alignment:
| Q |
270 |
tattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttca |
369 |
Q |
| |
|
|||||||||||| | ||||||| ||| |||||||| |||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||| | ||||||| |
|
|
| T |
36017111 |
tattttatttaccttgaattttgatagtgccacccagataaagtggctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttca |
36017210 |
T |
|
| Q |
370 |
aatcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtcc |
469 |
Q |
| |
|
||| ||| | || ||| |||| ||| | | ||||| || | ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
36017211 |
aattttgcttattctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatttgtcc |
36017310 |
T |
|
| Q |
470 |
attatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttc |
569 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||||||||| |||| | |
|
|
| T |
36017311 |
ctgatctttcttgcattctagaatcttgacgagttcattcaagcatcatttagaagaagcatagtctttcgagaatatgactatagatgcatctgactcc |
36017410 |
T |
|
| Q |
570 |
tcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataa---ctttcttgctcagagcttcataaa |
666 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| ||| | || | |||||||||||| || |
|
|
| T |
36017411 |
tcaatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcatctacaaatgtcctaacgccactccttttcagagcttcattaa |
36017510 |
T |
|
| Q |
667 |
tatggcttgtgaagtttctacgagtatcctcaccacgaaagt |
708 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
36017511 |
gatggcttgtgaatttgctacgagtatcctcaccacaaaagt |
36017552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 270 - 708
Target Start/End: Original strand, 36034017 - 36034462
Alignment:
| Q |
270 |
tattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttca |
369 |
Q |
| |
|
|||||||||||| | ||||||| ||| |||||||| |||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||| | ||||||| |
|
|
| T |
36034017 |
tattttatttaccttgaattttgatagtgccacccagataaagtggctgcttcagtgagagcatctttctatttctgcaacttgtctttgttgtgcttca |
36034116 |
T |
|
| Q |
370 |
aatcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtcc |
469 |
Q |
| |
|
||| ||| | ||| ||| |||| ||| | | ||||| || | ||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
36034117 |
aattttgcttatgctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgccc |
36034216 |
T |
|
| Q |
470 |
attatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgat----agatgcagacga |
565 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| || ||||||| || |
|
|
| T |
36034217 |
atgatctttcttgcattctagaatcttgacgagttcattcaaataccattttgaagaagcatagtcttttgagaatatgaatatatagagatgcatctga |
36034316 |
T |
|
| Q |
566 |
cttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataa---ctttcttgctcagagcttca |
662 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| || | |||| |||||||| | |
|
|
| T |
36034317 |
ctcctcaatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcgtctataaatgtccaaaggccgctcttttgcagagcttta |
36034416 |
T |
|
| Q |
663 |
taaatatggcttgtgaagtttctacgagtatcctcaccacgaaagt |
708 |
Q |
| |
|
| || |||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
36034417 |
ttaagatggcttgtgaatttgctacgagtatcctcaccatgaaagt |
36034462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 287 - 707
Target Start/End: Original strand, 23449029 - 23449452
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
|||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| || | |||||||||||||| | ||||||| |
|
|
| T |
23449029 |
atttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaatcttgcttatgtttt |
23449128 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
|||| ||| | | ||||| || |||| ||||||||||||||||||||||| | || |||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
23449129 |
gcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgttgcatatatttcttgcatt |
23449228 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
| |||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| |||||| |||||||| || |
|
|
| T |
23449229 |
caagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag |
23449328 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
23449329 |
tgctgccgagatctcatctccttttcgaagctcattgttgtctataaatgtttcaactttctttcggctcaaagcatcataaagatggctagtgaagttt |
23449428 |
T |
|
| Q |
684 |
ctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
23449429 |
ctgcgagtatcctcacctcgaaag |
23449452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 287 - 707
Target Start/End: Original strand, 23406508 - 23406931
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
||||||||||| ||| ||| | ||||| || || || ||||||| |||||||||||| | ||| ||||| || | ||||| |||||| | | ||||||| |
|
|
| T |
23406508 |
attttgagagtcccaaccaaccaaattagctgcctcagtgagagaatctttccatttcttcaacttgtcattattgtgctttaaatctcgcttatgtttt |
23406607 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
|||| ||| | | ||||| || |||| |||||||||| |||||||||||| | || |||| |||||||||||||||| | ||| ||||||||||| |
|
|
| T |
23406608 |
gcaaaggcttgcttgtaactcccggtctgcttcctcacatttgatggatctatgttgtaaaaaacaggtatcacaatctgttccatatatttcttgcatt |
23406707 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
| |||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| |||||| |||||||| || |
|
|
| T |
23406708 |
caagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag |
23406807 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| |||||||| || ||| |||||| ||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
23406808 |
tgctgccgagatctcatctcctttttgaagctcattgttgtctataaagattttaattttctttcggctcagagcgtcataaagatggctagtgaagttt |
23406907 |
T |
|
| Q |
684 |
ctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
23406908 |
ctgcgagtatcctcacctcgaaag |
23406931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 287 - 707
Target Start/End: Original strand, 23465162 - 23465585
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
|||| |||||| ||| ||| ||||||| || || || ||||||||| |||||||||| | ||| || || || | |||||||||| | | | ||||||| |
|
|
| T |
23465162 |
atttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatttcgcttatgtttt |
23465261 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
|||| ||| | | ||||| || |||| ||||||||||||||||||||||| | || |||| ||||||||||||||| | ||| ||||||||||| |
|
|
| T |
23465262 |
gcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgttccatatatttcttgcatt |
23465361 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
| |||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| |||||| |||||||| || |
|
|
| T |
23465362 |
caagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag |
23465461 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| |||||||| ||| ||||||||| ||||||||| || |||| |||||| ||||||||| |
|
|
| T |
23465462 |
tgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcgtcgtaaagatggctagtgaagttt |
23465561 |
T |
|
| Q |
684 |
ctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
23465562 |
ctgcgagtatcctcacctcgaaag |
23465585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 272 - 707
Target Start/End: Original strand, 23500777 - 23501215
Alignment:
| Q |
272 |
ttttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaa |
371 |
Q |
| |
|
||||| |||| ||| |||| |||||| ||| ||| | ||||| || || |||||||||| |||||||||||| | ||| ||||| || | ||||||||| |
|
|
| T |
23500777 |
ttttacttacctgtaatttcgagagtcccaaccaaccaaattagctgcctcggtgagagaatctttccatttcttcaacttgtcattattgtgcttcaaa |
23500876 |
T |
|
| Q |
372 |
tcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctg-tcca |
470 |
Q |
| |
|
||| | | ||||||| |||| ||| | | ||||| || |||| ||||||||||||||||||||||| | || |||| |||||||||||||| |||| |
|
|
| T |
23500877 |
tctcgcttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgctcca |
23500976 |
T |
|
| Q |
471 |
ttatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttct |
570 |
Q |
| |
|
||| |||||| ||||| |||||||| ||| |||||||||||||||||||| |||||||||| || |||||||||||| ||||||||| |||| || |
|
|
| T |
23500977 |
-tatatttcttacattcaagaatctttttgagctcattcaagcaccattttgacgaagcatagttttctgagaagatgacaatagatgcatgtgactcct |
23501075 |
T |
|
| Q |
571 |
caatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaat |
667 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| |||||||||| ||||||||||| |||||||| ||| ||||||||| ||||||||| || |||| |
|
|
| T |
23501076 |
caatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcgtcgtaaag |
23501175 |
T |
|
| Q |
668 |
atggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
23501176 |
atggctagtgaagtttctgcgagtatcctcacctcgaaag |
23501215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 412 - 707
Target Start/End: Original strand, 23480644 - 23480942
Alignment:
| Q |
412 |
tctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || |||| ||||||||||| ||| | |||| |||||||||||| |||||||| ||| |||||||| |
|
|
| T |
23480644 |
tctggttcctcacatgtgatggatctattttgtaaaaaactggtatcacaatgtgttccttatatttcttgcattcaagaatcttcttgagctcattcaa |
23480743 |
T |
|
| Q |
512 |
gcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttt |
611 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||| ||||||||| ||||||||||| |||||||| ||||||| ||||||||| ||||||||| |
|
|
| T |
23480744 |
gcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgacttctcaatggctttgatgagtgctggcgagatctcatctcctttt |
23480843 |
T |
|
| Q |
612 |
tcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
| ||||| ||||| |||||||| ||| ||||||||| ||||||||| ||||||| |||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
23480844 |
tgaagcttattgttgtctataaaggtttcaactttctttcggctcagagcatcataaagatggctggtgaagtttctgcgagtatcctcacctcgaaag |
23480942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 287 - 697
Target Start/End: Original strand, 23353659 - 23354072
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
|||| |||||| ||| ||| ||||||| || || |||||||||||| |||||||||| | ||| ||||| || | |||||||||||| | | ||||||| |
|
|
| T |
23353659 |
atttcgagagtcccaaccaactaaattagctgcctcggtgagagcagctttccatttctccaacttgtcattattgtgcttcaaatctcgcttatgtttt |
23353758 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
||||| ||| | | ||||| || |||| ||||||||||||||||||||||| | || |||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
23353759 |
tcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgttacatatatttcttgcatt |
23353858 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
| |||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| |||||| |||||||| || |
|
|
| T |
23353859 |
caagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag |
23353958 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| |||||||| ||| |||| |||| ||| ||||| ||||||| |||||| ||||||||| |
|
|
| T |
23353959 |
tgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcggcttagagcatcataaagatggctcgtgaagttt |
23354058 |
T |
|
| Q |
684 |
ctacgagtatcctc |
697 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
23354059 |
ctgcgggtatcctc |
23354072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 445 - 706
Target Start/End: Original strand, 36009671 - 36009932
Alignment:
| Q |
445 |
agaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaa |
544 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
36009671 |
agaaaacaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaa |
36009770 |
T |
|
| Q |
545 |
gatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataact |
644 |
Q |
| |
|
|||||| ||||||| | |||| |||||| |||||||| |||| ||| || ||||| |||||||||||||| ||| ||| || |||||| ||||||| |
|
|
| T |
36009771 |
gatgactatagatgtgtatgactcctcaatggctttgattagtgatgatgatatctcatctcctttttcaagatcaccgtcgtccataaatattataacc |
36009870 |
T |
|
| Q |
645 |
ttcttgctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaa |
706 |
Q |
| |
|
|||||||||||||| || || | ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
36009871 |
ttcttgctcagagcatcgtagagatggcctgtgaagtttctacgagtgccctcaccacgaaa |
36009932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 412 - 707
Target Start/End: Original strand, 23474296 - 23474594
Alignment:
| Q |
412 |
tctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||| | || |||| |||||||||||||||| | ||| |||||||||||| |||||||| ||| |||||||| |
|
|
| T |
23474296 |
tctgcttcctcacatgtgatggatctatgttgtaaaaaacaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaa |
23474395 |
T |
|
| Q |
512 |
gcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttt |
611 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| ||||| || |||| |||||| ||| |||| ||||||| ||| |||| ||||||||| |
|
|
| T |
23474396 |
gcaccattttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttt |
23474495 |
T |
|
| Q |
612 |
tcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
| ||||||||||| |||||||| ||| ||||||||| ||||||||| ||||||| ||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
23474496 |
tgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcgaaag |
23474594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 287 - 707
Target Start/End: Original strand, 23435230 - 23435650
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
||||||||||| ||| ||| ||||||| || || || |||||||| |||||||||| ||||| ||||| || | |||||||||||| | | ||||||| |
|
|
| T |
23435230 |
attttgagagtcccaaccaactaaattagctgcctcagtgagagcggctttccatttatgcaacttgtcattattgtgcttcaaatctcgcttatgtttt |
23435329 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
|||| ||| | | ||||| || |||| |||||||||||||||||| || | || |||| ||||||||| || | | ||| || |||||||| |
|
|
| T |
23435330 |
gcaaatgcttgcttgtaactcccggtctgcttcctcacatgtgatgga---atgttgtaaaaaacaggtatcacggtcaattccatatattgcttgcatt |
23435426 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||| |||||||||| || |||||||||||| ||||||||| |||| |||||| |||||||| || |
|
|
| T |
23435427 |
ctagaatctttttgagctcatttaagcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag |
23435526 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| |||||||| ||| ||||||||| ||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
23435527 |
tgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcatcataaagatggcatgtgaagttt |
23435626 |
T |
|
| Q |
684 |
ctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|| || ||||||||||| |||||| |
|
|
| T |
23435627 |
ctgcgggtatcctcacctcgaaag |
23435650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 412 - 707
Target Start/End: Original strand, 23441764 - 23442062
Alignment:
| Q |
412 |
tctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||| | || |||| |||||||||||||||| | ||| |||||||||||| |||||||| ||| |||||||| |
|
|
| T |
23441764 |
tctgcttcctcacatgtgatggatctatgttgtaaaaaacaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaa |
23441863 |
T |
|
| Q |
512 |
gcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttt |
611 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| ||||| || |||| |||||| ||| |||| ||||||| ||| |||| ||||||||| |
|
|
| T |
23441864 |
gcaccattttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttt |
23441963 |
T |
|
| Q |
612 |
tcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
| ||||||||||| |||||||| ||| ||||||||| |||| |||| ||||||| ||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
23441964 |
tgaagctcattgttgtctataaaggtttcaactttctttcggctccgagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcgaaag |
23442062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 272 - 707
Target Start/End: Original strand, 23455778 - 23456216
Alignment:
| Q |
272 |
ttttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaa |
371 |
Q |
| |
|
|||||||||| | | ||||||||||| ||| ||| ||||||| || || || ||||||| |||||||||| | ||| ||| | || | ||||||||| |
|
|
| T |
23455778 |
ttttatttacctataattttgagagtcccatccaactaaattagctgcctcagtgagagaggctttccatttctccaacttggcattattgtgcttcaaa |
23455877 |
T |
|
| Q |
372 |
tcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccat |
471 |
Q |
| |
|
||||| | ||||||| |||| ||| | | ||||| || | || |||||||||||||||||||| || | || |||||||||||||| |||||| | |
|
|
| T |
23455878 |
tcttgcttatgttttgcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatggatcaatgttgtaaaaaataggtatcacgatctgttcca |
23455977 |
T |
|
| Q |
472 |
tatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctc |
571 |
Q |
| |
|
||| || |||||||||||||||||| ||| |||||||| ||||||||||||||||| |||| || |||||||||||| ||||| || |||| ||| |
|
|
| T |
23455978 |
tatattgcttgcattctagaatctttttgagatcattcaaacaccattttgaggaagcgtagttttctgagaagatgacaatagacacatgtgactcctc |
23456077 |
T |
|
| Q |
572 |
aatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaata |
668 |
Q |
| |
|
||| | |||||| |||| || |||||||| |||||||||| ||| ||||||| ||||| || ||| ||||||||| |||| ||| ||||||| | |
|
|
| T |
23456078 |
aatggttttgatgagtgttggtgagatctcatctcctttttgaaggtcattgttgtctatgaaggtttcaactttctttcgactcaaagcatcataaaga |
23456177 |
T |
|
| Q |
669 |
tggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
23456178 |
tggcttgtgaagtttctgcgagtatcctcacctcgaaag |
23456216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 412 - 707
Target Start/End: Original strand, 23388273 - 23388571
Alignment:
| Q |
412 |
tctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
511 |
Q |
| |
|
|||| |||||||||||||| |||||||| | || |||| |||||||||||||||| ||| ||||||||||| |||||||| ||| |||||||| |
|
|
| T |
23388273 |
tctgcttcctcacatgtgagggatctatgttgtaaaaaacaggtatcacaatctgttgcatatatttcttgcattgaagaatcttcttgagctcattcaa |
23388372 |
T |
|
| Q |
512 |
gcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttt |
611 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||| || || | |||| |||||| |||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
23388373 |
gcaccattttgaggaagcataattttctgagaagatgataattgacacgtgtgactcctcaatggctttgatgagtgctggtgagatctcatctcctttt |
23388472 |
T |
|
| Q |
612 |
tcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||| || |||||||| ||||||| |||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
23388473 |
tcaagctcattgttgtctataaaggtttcaactttttttcggctcagagtatcataaagatggctcgtgaagtttctgcgagtatcatcacctcgaaag |
23388571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 452 - 707
Target Start/End: Original strand, 21087311 - 21087569
Alignment:
| Q |
452 |
aggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacg |
551 |
Q |
| |
|
|||||||||||| ||| | |||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| || |||||||||| | |
|
|
| T |
21087311 |
aggtatcacaatttgttccttatatttcttgcattctagaatctttttgagctcattcaagcaccattttgaggaagcgtagttttctgagaagatgtca |
21087410 |
T |
|
| Q |
552 |
atagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt-- |
649 |
Q |
| |
|
|| |||||| |||| ||||| |||||||| ||| ||| | ||||| |||||||||| ||||| ||||| |||||||| ||| ||| || || |
|
|
| T |
21087411 |
atcgatgcatgtgactcttcaatggctttgatgagttctggtgtgatcttatctccttttttaagcttattgttgtctataaaggtttgaacattatttt |
21087510 |
T |
|
| Q |
650 |
-gctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| | |||||||||||||| |||||| |
|
|
| T |
21087511 |
ggctcagagcatcataaagatggcttgtgatgtttttgcgagtatcctcacctcgaaag |
21087569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 412 - 619
Target Start/End: Original strand, 21088459 - 21088666
Alignment:
| Q |
412 |
tctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
511 |
Q |
| |
|
|||| ||| ||| |||| |||||||||||| || |||| |||||||||||||||| | || ||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
21088459 |
tctgcttcttcatatgtaatggatctattttgtaaaaaacaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaa |
21088558 |
T |
|
| Q |
512 |
gcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttt |
611 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||| || |||||| || |||| ||||||||||| ||| | ||||| ||||||||||||||||||| |
|
|
| T |
21088559 |
gcaccattttgaggaagcatagttttctgaaaagataacaatagatacacgtgactcctcaatagcttcgatgaatgctggcgagatctcgtctcctttt |
21088658 |
T |
|
| Q |
612 |
tcaagctc |
619 |
Q |
| |
|
| |||||| |
|
|
| T |
21088659 |
ttaagctc |
21088666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 406 - 534
Target Start/End: Complemental strand, 35766415 - 35766287
Alignment:
| Q |
406 |
ttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttc |
505 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| |||||| | |||||||||||| ||||| ||||||||| ||||| | ||||| || | ||| |
|
|
| T |
35766415 |
ttcctctctgatttctcacatgtgatggatctattttatagaacacaggtatcacaatttgtccccgatctttcttacattccatgatcttcacaatttc |
35766316 |
T |
|
| Q |
506 |
attcaagcaccattttgaggaagcatagt |
534 |
Q |
| |
|
|| ||| ||||| || || |||||||||| |
|
|
| T |
35766315 |
atccaaacaccacttggatgaagcatagt |
35766287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 271 - 707
Target Start/End: Complemental strand, 12894983 - 12894547
Alignment:
| Q |
271 |
attttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaa |
370 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| || | ||||||| |||||||| |
|
|
| T |
12894983 |
attttatttacctgtaattttgagagtgccacccagctaaattggctgcttcaatgagagcatctttccatttttgtaacatatctttgccgtgcttcaa |
12894884 |
T |
|
| Q |
371 |
atcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtcca |
470 |
Q |
| |
|
|||||| || |||||| |||| ||| | || || ||| | ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||| |
|
|
| T |
12894883 |
atcttgctcgtgttttgcaaaggcttgactgtacctccctgtttgattcctcacatgtgatggatctatttcgtaaaaaacaggtatcacaatttgtcca |
12894784 |
T |
|
| Q |
471 |
ttatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttct |
570 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||| || |
|
|
| T |
12894783 |
tgatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaggaagcatagtctattgagaagatgacaatagatgcatatgactcct |
12894684 |
T |
|
| Q |
571 |
caatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttcttgctcagagcttcataaatatg |
670 |
Q |
| |
|
|||| |||||||||| |||||| || ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
12894683 |
caatggctttgatcaatgctgaggatatctcatctcctttttgaagctcattgtcatctataaaggttataactttcttgctcaaagcatcataaagatg |
12894584 |
T |
|
| Q |
671 |
gcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
12894583 |
acttgtgaagcttctacgagtatcctcaccgcgaaag |
12894547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 31159947 - 31159984
Alignment:
| Q |
509 |
caagcaccattttgaggaagcatagtcttttgagaaga |
546 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
31159947 |
caagcaccatgttgaggaagcatagttttttgagaaga |
31159984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 8e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 258 - 707
Target Start/End: Complemental strand, 16335038 - 16334586
Alignment:
| Q |
258 |
agatgtataatttattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctt |
357 |
Q |
| |
|
||||| |||||| ||||||||||| | ||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16335038 |
agatggataattcattttatttaccttgaatttttagagtcccacccagataatttggagacttcggtgagagcatctttccatttttgcaagttgtctt |
16334939 |
T |
|
| Q |
358 |
tgctctgcttcaaatcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtat |
457 |
Q |
| |
|
| | ||| |||||| | |||| ||| |||| ||| | || || || |||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
16334938 |
tcttgtgcctcaaattcttctcatactttgcaaaggcttgcccgtagctcccaatctgatatctcacatgagatggatctatttcatagaaaattggtat |
16334839 |
T |
|
| Q |
458 |
cacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagat |
557 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||| |||||||| |||||| |
|
|
| T |
16334838 |
cacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagttttctgataagatgactatagat |
16334739 |
T |
|
| Q |
558 |
gcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataa---ctttcttgctca |
654 |
Q |
| |
|
||| | |||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||| ||| | |||| ||| |
|
|
| T |
16334738 |
gcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgttgtcatctataaatgtcttaaggccgctctttttca |
16334639 |
T |
|
| Q |
655 |
gagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16334638 |
aagcttcattaagatggcttgtgaattttctacgagtatcatcaccacgaaag |
16334586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 412 - 707
Target Start/End: Original strand, 16124767 - 16125065
Alignment:
| Q |
412 |
tctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
511 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16124767 |
tctgatttctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaa |
16124866 |
T |
|
| Q |
512 |
gcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttt |
611 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||| ||||||||| | |||| ||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
16124867 |
acaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctcctttt |
16124966 |
T |
|
| Q |
612 |
tcaagctcattgtcatctataaatgttataa---ctttcttgctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
| |||||| |||| ||||||||||| ||| | |||| ||| |||||||| || |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16124967 |
ttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatcaccacgaaag |
16125065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 420 - 707
Target Start/End: Original strand, 16126928 - 16127218
Alignment:
| Q |
420 |
ctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccatt |
519 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16126928 |
ctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccatt |
16127027 |
T |
|
| Q |
520 |
ttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctc |
619 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||| ||||||||| | |||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
16127028 |
ttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctc |
16127127 |
T |
|
| Q |
620 |
attgtcatctataaatgttataa---ctttcttgctcagagcttcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|||| ||||||||||| ||| | |||| ||| |||||||| || |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
16127128 |
gctgtcgtctataaatgtcttaacaccgctctttttcaaagcttcattaagatggcttgtgaattttctacgagtatcatcaccacgaaag |
16127218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 343
Target Start/End: Original strand, 16124628 - 16124713
Alignment:
| Q |
258 |
agatgtataatttattttatttacttgtgattttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccattt |
343 |
Q |
| |
|
||||| |||||| ||||||||||| | | ||| ||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
16124628 |
agatggataattcattttatttaccttgaacttttagagtcccacccagataaattggagacttcggtgagagcatctttccattt |
16124713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 287 - 707
Target Start/End: Original strand, 13336 - 13759
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
|||| |||||| ||| ||| ||||||| || || || ||||||||| |||||||||| | ||| || || || | |||||||||||| | | ||||||| |
|
|
| T |
13336 |
atttcgagagtcccaaccaactaaattagctgcatcagtgagagcagctttccatttctccaacttatcgttattgtgcttcaaatctcgcttatgtttt |
13435 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
|||| ||| | |||||||| |||| |||||||||| || ||||||||| | || |||| |||||||||||||||| | ||| ||||||||||| |
|
|
| T |
13436 |
gcaaaggcttgctggtaacttccagtctgcttcctcacatttgctggatctatgttgtaaaaaacaggtatcacaatctgttccatatatttcttgcatt |
13535 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
| |||||||| ||| ||||| ||||||||||||||||||||||||| || |||||||||||| ||||||||| |||| |||||| |||||||| || |
|
|
| T |
13536 |
caagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag |
13635 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| || ||||| ||| || |||||| | ||||||| ||||||| ||||||| |||||||| |
|
|
| T |
13636 |
tgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttctttcggatcagagcatcataaagatggcttctgaagttt |
13735 |
T |
|
| Q |
684 |
ctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|| ||| |||||||||| |||||| |
|
|
| T |
13736 |
ctgcgaatatcctcacctcgaaag |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 287 - 707
Target Start/End: Complemental strand, 10004 - 9581
Alignment:
| Q |
287 |
attttgagagtaccacccagctaaattggcagcttcggtgagagcatctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttt |
386 |
Q |
| |
|
|||| |||||| ||| ||| ||||||| || || ||||||||||| ||||||| || | ||| ||||| || | |||||||||| | | ||||||| |
|
|
| T |
10004 |
atttcgagagtcccaaccaactaaattagctgcctcggtgagagcggctttccagttcttcaacttgtcattattgctcttcaaatctcgcttatgtttt |
9905 |
T |
|
| Q |
387 |
tcaaaagctaacatataacttcctttctgattcctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcatt |
486 |
Q |
| |
|
||||| ||| | |||||||| |||| || ||||||| || |||||||| | || |||| ||||||||| |||||| | ||| || |||||||| |
|
|
| T |
9904 |
tcaaaggcttgctcgtaacttccagtctgctttctcacatttgctggatctaagttgtaaaaaacaggtatcaccatctgttccatatattgcttgcatt |
9805 |
T |
|
| Q |
487 |
ctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcag |
586 |
Q |
| |
|
| |||||||| ||| ||||| ||||||||||||||||||||||||| || ||||||||| || ||||||||| |||| |||||| |||||||| || |
|
|
| T |
9804 |
caagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagattacaatagatgcatgtgactcctcaatggctttgatgag |
9705 |
T |
|
| Q |
587 |
tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataactttctt---gctcagagcttcataaatatggcttgtgaagttt |
683 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| || ||||| ||| || |||||| ||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
9704 |
tgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttctttcggctcagagcatcataaagatggcttgttaagttt |
9605 |
T |
|
| Q |
684 |
ctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
9604 |
ctgcgagtatcctcacctcgaaag |
9581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 419 - 547
Target Start/End: Complemental strand, 3437 - 3309
Alignment:
| Q |
419 |
cctcacatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccat |
518 |
Q |
| |
|
||||||||| ||||||||||| || || |||| || || ||||||||| | ||| ||||| |||||||| |||||| ||| ||||||||||| ||| |
|
|
| T |
3437 |
cctcacatgcgatggatctatgtcgtaaaaaacagacattacaatctgttccatatatttctagcattctataatctttttgagctcattcaagcatcat |
3338 |
T |
|
| Q |
519 |
tttgaggaagcatagtcttttgagaagat |
547 |
Q |
| |
|
|||||||||||||||| || ||||||||| |
|
|
| T |
3337 |
tttgaggaagcatagttttatgagaagat |
3309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 620
Target Start/End: Complemental strand, 167677 - 167561
Alignment:
| Q |
504 |
tcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgt |
603 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||||||| ||||||||| ||| |||||| |||||||| |||| || ||||||||| | |
|
|
| T |
167677 |
tcattcaagcaccattatgaggaagcatagttttctgagaagatgacaatagatgcatgttactcctcaatggctttgatgagtgttggcgagatctcat |
167578 |
T |
|
| Q |
604 |
ctcctttttcaagctca |
620 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
167577 |
ctcctttttgaagctca |
167561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 707
Target Start/End: Complemental strand, 167542 - 167495
Alignment:
| Q |
660 |
tcataaatatggcttgtgaagtttctacgagtatcctcaccacgaaag |
707 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
167542 |
tcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaag |
167495 |
T |
|
Back To:
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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 544
Target Start/End: Original strand, 6188556 - 6188677
Alignment:
| Q |
423 |
acatgtgatggatctatttcatagaaaataggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttg |
522 |
Q |
| |
|
||||||||||||||||| | |||||| | |||||| || | ||||||||| ||| |||||| || || | ||||||||||| ||||||||| |||| |
|
|
| T |
6188556 |
acatgtgatggatctatgttatagaacacaggtataactacatgtccattaagttttctgcattgaagtatgtggacgagttcatccaagcaccactttg |
6188655 |
T |
|
| Q |
523 |
aggaagcatagtcttttgagaa |
544 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
6188656 |
aagttgcatagtcttttgagaa |
6188677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 544
Target Start/End: Original strand, 6097884 - 6097933
Alignment:
| Q |
495 |
ttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaa |
544 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||||| || |||||| |
|
|
| T |
6097884 |
ttgaggagttcatccaaacaccattttgaggaagcatagttttctgagaa |
6097933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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