View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_10 (Length: 377)
Name: NF1700_low_10
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 378471 - 378145
Alignment:
| Q |
14 |
agaaagaaaatgcttcaacatacttcaatcatcatcaaaaaccaaaacttttaaaacattacttcaaatccacgctttcattctccgtaactctcttcat |
113 |
Q |
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| T |
378471 |
agaaagaaaatgcttcaacatacttcaatcatca---aaaaccaaaacttttaaaacattacttgaaatccacgctttcattctccgtaactctcttcat |
378375 |
T |
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| Q |
114 |
aacaatcttcaccttctcaccaaattcatctcttcttccacttccctcgctctttctactcctcgcagaaaccacgccgtttccattgttcaacacgctc |
213 |
Q |
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| T |
378374 |
aacaatcttcaccttcttaccaaattcatctcttcttccacttccctcgctctttctactcctcgcagaaacgacgccgtttccattgttcaacacgctc |
378275 |
T |
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| Q |
214 |
gtcttttcttcaaccacacgccaccccacaaacgcgatgaatttctctgcaacactatcatcaatgcccatttctcacttcatcaattcaatcacggttt |
313 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
378274 |
gtcttttcttcaaccacacgccaccccacaaatgcgatgaatttctctgcaacactatcatcaatgcccatttctcacttcgtcaattcaatcacggttt |
378175 |
T |
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| Q |
314 |
cactctctacaaccagttttctaaagactg |
343 |
Q |
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| T |
378174 |
cactctctacaaccagttttctaaagactg |
378145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 1607004 - 1606913
Alignment:
| Q |
66 |
aaaacattacttcaaatccacgctttcattctccgtaactctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
157 |
Q |
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| T |
1607004 |
aaaacattacttgaaatccacgctttctttcttcaaaactattttcaaaaaaatctcaaccctctcaccaaattcatctcttcttccacttc |
1606913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 1107714 - 1107664
Alignment:
| Q |
107 |
tcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
157 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
1107714 |
tcttcaaaacaatctcaaccctctcaccaaattcatctcttcttccacttc |
1107664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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