View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_11 (Length: 372)
Name: NF1700_low_11
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 105 - 355
Target Start/End: Original strand, 48056448 - 48056698
Alignment:
| Q |
105 |
agatagcatttcaattactatagcgatgtttgctaattgctgctactactttactcaaacttaatactttccaacaacagttccttataaaaattattgg |
204 |
Q |
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| T |
48056448 |
agatagcatttcaattactatagcgatgtttgctaattgctactactactttactcaaacttaatactttccaacaacagttccttataaaaattattgg |
48056547 |
T |
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| Q |
205 |
gaagcatttgaacttcctcttcttcgattaagcttccttcattattctctctcagttcctgcgaaaaaagctcaggccaagacatactgacaccaccatc |
304 |
Q |
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| T |
48056548 |
gaagcatttgaacttcctcttcttcgattaagcttccttcattcttctctctcagttcctgcgaaaaaagctcaggccaagacataatgacaccaccatc |
48056647 |
T |
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| Q |
305 |
ttcttctccgttcctaatgtgatcatcatcttctttgttaaatttggaatc |
355 |
Q |
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| T |
48056648 |
ttcttctccgttcctaatgtgatcatcatcttctttgttaaatttggaatc |
48056698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 17056462 - 17056608
Alignment:
| Q |
165 |
ttaatactttccaacaacagttccttataaaaattattgggaagcatttgaacttcctcttcttcgattaagcttccttcattattctctctcagttcct |
264 |
Q |
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| T |
17056462 |
ttaatattttccgacaataagtccttataaaactgattggaaatcattggaacatcttcctcttcgatcaagcatccttcattcatctctctcagctgca |
17056561 |
T |
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| Q |
265 |
gcgaaaaaagctcaggccaagacatactgacaccaccatcttcttct |
311 |
Q |
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| T |
17056562 |
acgaaaacaactcaggccaagacataatagcatcaccatcttcttct |
17056608 |
T |
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