View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1700_low_15 (Length: 338)

Name: NF1700_low_15
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1700_low_15
NF1700_low_15
[»] chr4 (6 HSPs)
chr4 (26-323)||(17653280-17653576)
chr4 (48-188)||(16426259-16426398)
chr4 (20-173)||(14692083-14692236)
chr4 (32-188)||(20575794-20575954)
chr4 (96-184)||(14691974-14692062)
chr4 (199-233)||(16426101-16426135)
[»] chr8 (9 HSPs)
chr8 (32-188)||(5931004-5931159)
chr8 (50-172)||(30868818-30868938)
chr8 (50-172)||(34206596-34206716)
chr8 (20-184)||(30868638-30868802)
chr8 (20-184)||(34206732-34206894)
chr8 (122-181)||(26227996-26228055)
chr8 (199-234)||(34206422-34206457)
chr8 (199-233)||(5931284-5931318)
chr8 (199-233)||(30869078-30869112)
[»] chr3 (7 HSPs)
chr3 (36-188)||(21664377-21664528)
chr3 (32-188)||(54708875-54709030)
chr3 (48-188)||(15826371-15826510)
chr3 (48-188)||(10312071-10312210)
chr3 (199-234)||(10311859-10311894)
chr3 (199-233)||(21664228-21664262)
chr3 (201-233)||(15826235-15826267)
[»] chr7 (5 HSPs)
chr7 (20-185)||(29200074-29200239)
chr7 (50-172)||(12620451-12620571)
chr7 (20-184)||(12620271-12620435)
chr7 (199-233)||(12620711-12620745)
chr7 (199-233)||(29200357-29200391)
[»] scaffold0499 (1 HSPs)
scaffold0499 (50-188)||(2228-2365)
[»] scaffold0483 (4 HSPs)
scaffold0483 (50-188)||(1374-1511)
scaffold0483 (20-173)||(12706-12859)
scaffold0483 (20-184)||(1527-1691)
scaffold0483 (96-184)||(12597-12685)
[»] scaffold0109 (2 HSPs)
scaffold0109 (50-188)||(46161-46298)
scaffold0109 (20-184)||(46314-46478)
[»] chr6 (7 HSPs)
chr6 (20-184)||(12761138-12761303)
chr6 (20-188)||(16316057-16316225)
chr6 (50-188)||(12761318-12761454)
chr6 (50-172)||(14645436-14645556)
chr6 (20-184)||(14645572-14645737)
chr6 (66-187)||(16316253-16316372)
chr6 (199-233)||(14645262-14645296)
[»] scaffold0150 (2 HSPs)
scaffold0150 (20-184)||(11660-11823)
scaffold0150 (50-172)||(11839-11959)
[»] chr2 (1 HSPs)
chr2 (20-188)||(28754540-28754708)
[»] chr1 (1 HSPs)
chr1 (32-188)||(48971354-48971509)
[»] scaffold0933 (3 HSPs)
scaffold0933 (50-172)||(117-237)
scaffold0933 (128-184)||(45-101)
scaffold0933 (199-233)||(377-411)
[»] scaffold0018 (3 HSPs)
scaffold0018 (35-114)||(124001-124080)
scaffold0018 (53-187)||(123791-123923)
scaffold0018 (199-233)||(123644-123678)
[»] chr5 (3 HSPs)
chr5 (199-234)||(29284859-29284894)
chr5 (137-187)||(29285019-29285069)
chr5 (51-106)||(42936268-42936323)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 26 - 323
Target Start/End: Original strand, 17653280 - 17653576
Alignment:
Q  26 ttttccagcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtatt 125  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  17653280 ttttccagcgctttttttatgcataaagcgctatctaaacctagtgttacatagcgttttaaaataaaagatgctattttttactagtgtatgcagtatt 17653379  T
Q  126 ttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcgnnnnnnngacaaaaagtgctatataagcccatttttg 225  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||| ||||||||||    
T  17653380 ttaaacgccttttagatggcatttattattgaaagcgctaactaagtagaatctttgctagcg-ctttttgacaaaaagtgctatataaacccatttttg 17653478  T
Q  226 tagtagtggcatcactaactcccacttcaaccacgtataaatattataccacaccggaagaccgaactcacaatgtacaaacaaatgaccaaacgact 323  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17653479 tagtagtgacatcactaactcccacttcaaccacgtataaatattataccacacccgaagaccgaactcacaatgtacaaacaaatgaccaaacgact 17653576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 16426398 - 16426259
Alignment:
Q  48 ataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgt 147  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||| |||||||||  |||||||||| ||||||||||||||     
T  16426398 ataaagcgctatctaaacctagtgttacatagcgtttttaaacaaaa-acgctgttttctaccagtgtatgcgttattttaaaccccttttagatggcgc 16426300  T
Q  148 ttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  16426299 ttattattgaaagcgctatctaaggagaatctttgctagcg 16426259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 14692236 - 14692083
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |      
T  14692236 taatgcttttcctagcgattttttcatgcgtaaagcgctatataaacctagtgttacatagcgttttaaaacaaaa-atgctattttttactagtgaaaa 14692138  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaagga 173  Q
    || ||||| | || ||||||||| ||||||||||||||||||||||| |||||||    
T  14692137 cattatttcagacaccttttagacggcgtttattattgaaagcgctatctaagga 14692083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 20575954 - 20575794
Alignment:
Q  32 agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgct-attttttactagtgtatgcagtattttaaa 130  Q
    |||||||||||| || ||||||||  ||||||||||||||||||||||||||||||||||||| | |||  ||||||||||| | ||||  |||||||||    
T  20575954 agcgcttttttcttgtataaagcgaaatctaaacctagtgttacatagcgttttaaaacaaaa-atgctgtttttttactagcgcatgcgttattttaaa 20575856  T
Q  131 cgccttttagatggcgtttattattgaaa----gcgctaactaaggagaatctttgctagcg 188  Q
    | | |||||||||||||||||| ||||||    |||||| ||||||||||||| ||||||||    
T  20575855 ccctttttagatggcgtttatttttgaaagcgcgcgctatctaaggagaatctatgctagcg 20575794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 14692062 - 14691974
Alignment:
Q  96 acgctattttttactagtgtatgcagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |||||||||||||| |||| |||   ||||||||||| |||||||||||| |||||||| ||||||||||  ||| ||||| |||||||    
T  14692062 acgctattttttacgagtgcatgtgttattttaaacgtcttttagatggcttttattatcgaaagcgctatttaaagagaagctttgct 14691974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 16426135 - 16426101
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  16426135 aaaaagcgctatataagcccatttttgtagtagtg 16426101  T

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Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 5931004 - 5931159
Alignment:
Q  32 agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaac 131  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    |||||||||    
T  5931004 agcgcttttttcctccataaagtgctatctaaacctagtgttacatagcgttttaaaacaaaag-cgctattttatactagtgtatgtgtaattttaaac 5931102  T
Q  132 gccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    | ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  5931103 gtcttttagatggcgtttattatcgaaagcgctatctaaagagaatctttgctagcg 5931159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 30868818 - 30868938
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||| ||   |||| ||||  ||||||||||||||||||||||||| ||    
T  30868818 aaagcgctatctaaacctggtgttacatagcgttttcaaacataa-acgctatttcttga-agtgaatgcgttattttaaacgccttttagatggcgctt 30868915  T
Q  150 attattgaaagcgctaactaagg 172  Q
    | |||| ||||||||| ||||||    
T  30868916 aatattaaaagcgctatctaagg 30868938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 34206716 - 34206596
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||| ||||||||||||| ||||||||||||||||| ||||| || ||||||||||||   |||| ||||  ||||||||| ||||||||||||||||||    
T  34206716 aaagtgctatctaaacctggtgttacatagcgttttcaaacataa-acgctattttttga-agtgaatgcgttattttaaaagccttttagatggcgttt 34206619  T
Q  150 attattgaaagcgctaactaagg 172  Q
    | |||| ||||||||| ||||||    
T  34206618 aatattaaaagcgctatctaagg 34206596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 30868638 - 30868802
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||   |  ||| |||||||||||||||| || |      
T  30868638 taatgcttttcctagcgcttttttcatgtgtaaagcgctatataaacatagtgttacatagcgtttttttattaaa-acgctattttttactaatgaaaa 30868736  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |  ||||  |||||||||||||| |||||||| |||| ||||||||| |||| ||  |||||||||    
T  30868737 cgttattccaaacgccttttagacggcgtttaatattaaaagcgctatctaaagattatctttgct 30868802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 34206894 - 34206732
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||  |  |||  |||||||||||||||| || |      
T  34206894 taatgcttttcctagcgcttttttcatgtgtaaagcgctatataaacatagtgttacatagcgttttttattaaa--acgctattttttactaatggaaa 34206797  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    | ||  || |||||||||||||| ||||||||||||| ||||| ||| |||| ||  |||||||||    
T  34206796 c-gttattcaaacgccttttagacggcgtttattattaaaagctctatctaaagattatctttgct 34206732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 26227996 - 26228055
Alignment:
Q  122 tattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatcttt 181  Q
    |||||||||| | | |||| |||| |||||| |||||||||||| |||||||||||||||    
T  26227996 tattttaaacccttattaggtggcatttatttttgaaagcgctatctaaggagaatcttt 26228055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 34206457 - 34206422
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtgg 234  Q
    |||||| |||||||||||||||||||||||||||||    
T  34206457 aaaaagcgctatataagcccatttttgtagtagtgg 34206422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 5931284 - 5931318
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  5931284 aaaaagcgctatataagcccatttttgtagtagtg 5931318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 30869078 - 30869112
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  30869078 aaaaagcgctatataagcccatttttgtagtagtg 30869112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 21664528 - 21664377
Alignment:
Q  36 cttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgcct 135  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||   ||||||||||| ||    
T  21664528 cttttttcctccataaagtgctatctaaacctagtgttacatagcgttttaaaacaaaag-cgctactttttactagtgtatgtgttattttaaacgtct 21664430  T
Q  136 tttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  21664429 tttagatggcgtttattatcgaaagcgctatctaaagagaatctttgctagcg 21664377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 54709030 - 54708875
Alignment:
Q  32 agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaac 131  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    |||||||||    
T  54709030 agcgcttttttcctccataaagtgctatctaaacctagtgttacatagcgttttaaaacaaaag-cgctattttatactagtgtatgtgtaattttaaac 54708932  T
Q  132 gccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    | ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  54708931 gtcttttagatggcgtttattatcgaaagcgctatctaaagagaatctttgctagcg 54708875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 15826510 - 15826371
Alignment:
Q  48 ataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgt 147  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||| ||| |||||||||  |||||||||| ||||||| ||||||     
T  15826510 ataaagtgctatctaaacctagtgttacatagcgtttttaaacaaaa-acgctgttttctacaagtgtatgcgttattttaaaccccttttacatggcgc 15826412  T
Q  148 ttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  15826411 ttattattgaaagcgctatctaaggagaatctttgctagcg 15826371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 10312210 - 10312071
Alignment:
Q  48 ataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgt 147  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||| ||| |||||||||  |||||||||| ||||||||||||||     
T  10312210 ataaagcgttatctaaacctagtgttacatagcgtttttaaacaaaa-acgctgttttctacaagtgtatgcgttattttaaaccccttttagatggcgc 10312112  T
Q  148 ttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  10312111 ttattaatgaaagcgctatctaaggagaatctttgccagcg 10312071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 10311894 - 10311859
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtgg 234  Q
    |||||| |||||||||||||||||||||||||||||    
T  10311894 aaaaagcgctatataagcccatttttgtagtagtgg 10311859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 21664262 - 21664228
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  21664262 aaaaagcgctatataagcccatttttgtagtagtg 21664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 15826267 - 15826235
Alignment:
Q  201 aaagtgctatataagcccatttttgtagtagtg 233  Q
    |||| ||||||||||||||||||||||||||||    
T  15826267 aaagcgctatataagcccatttttgtagtagtg 15826235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 29200074 - 29200239
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| | |||  ||||| |||||  |||    
T  29200074 taatgcttttcctagcgcttttttcttgtataaagcgctatctaaacctaatgttacatagcgttttaaaacaaaa-atgctgctttttgctagtacatg 29200172  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgcta 185  Q
    |  |||||||||| ||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  29200173 cgttattttaaaccccttttagatggcgtttattattgaaagcgctatctaaggagggtctttgcta 29200239  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 12620451 - 12620571
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||   |||| ||||  ||||||||| ||||||||||||||||||    
T  12620451 aaagcgctatctaaacctggtgttacatagcgttttcaaacataa-acgctatttttt-gaagtgaatgcgttattttaaatgccttttagatggcgttt 12620548  T
Q  150 attattgaaagcgctaactaagg 172  Q
    | |||| |||| |||| ||||||    
T  12620549 aatattaaaagagctatctaagg 12620571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 12620271 - 12620435
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||   |  ||| |||||||||||||||| || |      
T  12620271 taatgcttttcctagcgcttttttcatgtgtaaagcgctatataaacatagtgttacatagcgtttttttattaaa-acgctattttttactaatgaaaa 12620369  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |  ||||  |||||||||||||| ||||||||||||| ||||||||| |||| ||  |||||||||    
T  12620370 cgttattccaaacgccttttagacggcgtttattattaaaagcgctatctaaagattatctttgct 12620435  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 12620711 - 12620745
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  12620711 aaaaagcgctatataagcccatttttgtagtagtg 12620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 29200357 - 29200391
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  29200357 aaaaagcgctatataagcccatttttgtagtagtg 29200391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 2228 - 2365
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||| ||||| |||||||||| |||| |||||||| |||    
T  2228 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaa-acgctgttttttaattgtgcatgcattattttaaaccccttatagatggctttt 2326  T
Q  150 attattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    |||| |||||| |||| |||||||||| |||||||||||    
T  2327 attactgaaagggctatctaaggagaacctttgctagcg 2365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 1511 - 1374
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||   ||||||||||| ||||||||||||||||    
T  1511 aaagcgctatgtaaacctagtgttacatagcgttttcaaacataa-acgctattttttactagtgcatgtgttattttaaacgtcttttagatggcgttt 1413  T
Q  150 attattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    ||||| ||||||||||  ||| |||||||||||||||||    
T  1412 attatcgaaagcgctatttaaagagaatctttgctagcg 1374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 12859 - 12706
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |      
T  12859 taatgcttttcctagcgattttttcatgcgtaaagcgctatataaacctagtgttacatagcgttttaaaacaaaa-atgctattttttactagtgaaaa 12761  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaagga 173  Q
    || ||||| | || ||||||||| ||||||||||||||||||||||| |||||||    
T  12760 cattatttcagacaccttttagacggcgtttattattgaaagcgctatctaagga 12706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 1691 - 1527
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |      
T  1691 taatgcttttcctagcgcttttttcatgcgtagagcgctatataaacctagtattacatagcgttttaaaacaaaa-acgctattttttactagtgaaaa 1593  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |  ||||| | |||||||||||| ||||||||||||||||||||||| || ||||  |||||||||    
T  1592 cgttatttcagacgccttttagacggcgtttattattgaaagcgctatctgaggattatctttgct 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 12685 - 12597
Alignment:
Q  96 acgctattttttactagtgtatgcagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |||||||||||||| |||| |||   ||||||||||| |||||||||||| |||||||| ||||||||||  ||| ||||| |||||||    
T  12685 acgctattttttacgagtgcatgtgttattttaaacgtcttttagatggcttttattatcgaaagcgctatttaaagagaagctttgct 12597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 46298 - 46161
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |||   ||||||||||| ||||||||||||||||    
T  46298 aaagcgctatgtaaacctagtgttacatagcgttttcaaacataa-acgctattttttactagtgcatgtgttattttaaacgtcttttagatggcgttt 46200  T
Q  150 attattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    ||||| ||||||||||  ||| |||||||||||||||||    
T  46199 attatcgaaagcgctatttaaagagaatctttgctagcg 46161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 46478 - 46314
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |      
T  46478 taatgcttttcctagcgcttttttcatgcgtagagcgctatataaacctagtattacatagcgttttaaaacaaaa-acgctattttttactagtgaaaa 46380  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |  ||||| | |||||||||||| ||||||||||||||||||||||| || ||||  |||||||||    
T  46379 cgttatttcagacgccttttagacggcgtttattattgaaagcgctatctgaggattatctttgct 46314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 12761138 - 12761303
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgcta-ttttttactagtgtat 117  Q
    ||||| |||||| |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |     
T  12761138 taatgtttttcctagcgcttttttcatgtgtaaagcgctatataaacttagtgttacatagcgttttaaaacaaaa-acgctatttttttactagtgaaa 12761236  T
Q  118 gcagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
     |  ||||| ||||||||||||||  |||||||||||||||||||||| |||| ||  |||||||||    
T  12761237 acgttatttcaaacgccttttagacagcgtttattattgaaagcgctacctaatgattatctttgct 12761303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 16316057 - 16316225
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| ||||||| |||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||| |||||| |||||||||||| |      
T  16316057 taatgcttttcctagcgcttctttcatgcgtaaagcgctatataaaccaagtgttacatagcattttaaaacaaaa-acgctactttttactagtgaaaa 16316155  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    |  ||||| ||| |||||||||| ||||||| ||||||||||||||| ||||||  |||||||| |||||    
T  16316156 cgttatttcaaatgccttttagacggcgtttgttattgaaagcgctatctaaggttaatctttgttagcg 16316225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 12761318 - 12761454
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    ||||||||||||||||||||||||||||||| |||| ||||| || ||||||||||||   |||| ||||  ||||||||| ||||||||||||||||||    
T  12761318 aaagcgctatctaaacctagtgttacatagctttttcaaacataa-acgctattttttga-agtgaatgcgttattttaaatgccttttagatggcgttt 12761415  T
Q  150 attattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    |||||  ||||||||| ||||||  ||||||||||||||    
T  12761416 attataaaaagcgctatctaaggttaatctttgctagcg 12761454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 14645556 - 14645436
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||   |||| | ||  ||||||||||||||||||||||||||||    
T  14645556 aaagcgctatctaaacctggtgttacatagcgttttcaaacataa-acgctattttttga-agtgaaggcgttattttaaacgccttttagatggcgttt 14645459  T
Q  150 attattgaaagcgctaactaagg 172  Q
    | |||| ||||||||| ||||||    
T  14645458 aatattaaaagcgctatctaagg 14645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 14645737 - 14645572
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||       || |||||||||||||||| || |      
T  14645737 taatgcttttcctagcgcttttttcatgtgtaaagcgctatataaacatagtgttacatagcgttttttttattaaaacgctattttttactaatgaaaa 14645638  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |  ||||  |||||||||||||||||||||||||||| ||||||||| |||| ||  |||||||||    
T  14645637 cgttattccaaacgccttttagatggcgtttattattaaaagcgctatctaaagattatctttgct 14645572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 16316253 - 16316372
Alignment:
Q  66 ctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgtttattattgaaagcgcta 165  Q
    |||||||||||||||||||| ||||| || | |||||||||||  |||  |||   |||||||||||| ||||||||||| |||||||||||||||||||    
T  16316253 ctagtgttacatagcgttttcaaacataaaa-gctattttttaa-agttaatgtgttattttaaacgcattttagatggcttttattattgaaagcgcta 16316350  T
Q  166 actaaggagaatctttgctagc 187  Q
     ||||||  |||||||| ||||    
T  16316351 cctaaggttaatctttgttagc 16316372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 14645296 - 14645262
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  14645296 aaaaagcgctatataagcccatttttgtagtagtg 14645262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 11660 - 11823
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |      
T  11660 taatgcttttcctagcgcttttttcatgcgtaaagtgctatataaacctagtgttacatagcgttttaaaacaaaa-acgcta-tttttactagtgaaaa 11757  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |  ||||||  |||||||||||| | ||||||||| ||||||||||| |||||||  |||||||||    
T  11758 cgatatttttgacgccttttagacgacgtttattactgaaagcgctatctaaggattatctttgct 11823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 11839 - 11959
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||||||||| | ||||||| |||| |||| ||||| || ||||||||||||||||||| |  |  ||||||  ||||||||||||  ||||||    
T  11839 aaagcgctatctaaacatggtgttacttagcattttcaaacataa-acgctattttttactagtgaaaacgatatttttgacgccttttaga-cgcgttt 11936  T
Q  150 attattgaaagcgctaactaagg 172  Q
    ||| |||||||||||| ||||||    
T  11937 atttttgaaagcgctatctaagg 11959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 28754708 - 28754540
Alignment:
Q  20 taatgattttcc-agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatg 118  Q
    ||||| |||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || | ||||  ||||||| |||  ||    
T  28754708 taatgtttttcctagcgcttttttcctgtataaagcgctatctaaacctagtgttacatagcgttttaaaacataa-atgctacattttacttgtgcttg 28754610  T
Q  119 cagtattttaaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
    ||  ||||||||| ||||| |||| || ||||||||||||||||||| ||||| ||||  ||||||||||    
T  28754609 cataattttaaacccctttaagatagcatttattattgaaagcgctatctaagaagaacttttgctagcg 28754540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 48971509 - 48971354
Alignment:
Q  32 agcgcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaac 131  Q
    |||||||||||| || ||||||||  ||||||||||||| || |||||||||||||||||||| | ||| |||||  ||||||  |||  |||||||| |    
T  48971509 agcgcttttttcctgtataaagcgtcatctaaacctagtattgcatagcgttttaaaacaaaa-aagctgtttttacctagtgcttgcgttattttaacc 48971411  T
Q  132 gccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagcg 188  Q
     |||||||| || |||||||| ||||||| |||| |||||||||| |||||||||||    
T  48971410 cccttttaggtgacgtttatttttgaaagtgctatctaaggagaacctttgctagcg 48971354  T

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Target: scaffold0933 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 117 - 237
Alignment:
Q  50 aaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgttt 149  Q
    |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||   |||| ||||  ||||||||||||||||||||||||| ||    
T  117 aaagcgctatctaaacctggtgttacatagcgttttcaaacataa-acgctattttttga-agtgaatgcgttattttaaacgccttttagatggcgctt 214  T
Q  150 attattgaaagcgctaactaagg 172  Q
    | |||| ||||||||| ||||||    
T  215 aatattaaaagcgctatctaagg 237  T

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Target: scaffold0933; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 45 - 101
Alignment:
Q  128 aaacgccttttagatggcgtttattattgaaagcgctaactaaggagaatctttgct 184  Q
    |||||||||||||| ||||||||||||| ||||||||| |||| ||  |||||||||    
T  45 aaacgccttttagacggcgtttattattaaaagcgctatctaaagattatctttgct 101  T

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Target: scaffold0933; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 377 - 411
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  377 aaaaagcgctatataagcccatttttgtagtagtg 411  T

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Target: scaffold0018 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 124080 - 124001
Alignment:
Q  35 gcttttttcatgcataaagcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtg 114  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| | |||||| ||||||||||    
T  124080 gcttttttcatgcctaaagcgctatataaacctagtgttacatagctttttaaaacaaaaaaggctattatttactagtg 124001  T

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Target: scaffold0018; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 123923 - 123791
Alignment:
Q  53 gcgctatctaaacctagtgttacatagcgttttaaaacaaaagacgctattttttactagtgtatgcagtattttaaacgccttttagatggcgtttatt 152  Q
    |||||||||||||||| ||||||||||| |||| ||||| || |||||||| |||   || | ||||  |||||||||| ||||||||||||||||||||    
T  123923 gcgctatctaaacctaatgttacatagcattttcaaacataa-acgctattgtttga-agggaatgcgttattttaaaccccttttagatggcgtttatt 123826  T
Q  153 attgaaagcgctaactaaggagaatctttgctagc 187  Q
    ||| ||||||||| ||||||  |||||||||||||    
T  123825 attaaaagcgctatctaaggttaatctttgctagc 123791  T

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Target: scaffold0018; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 123678 - 123644
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtg 233  Q
    |||||| ||||||||||||||||||||||||||||    
T  123678 aaaaagcgctatataagcccatttttgtagtagtg 123644  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 29284894 - 29284859
Alignment:
Q  199 aaaaagtgctatataagcccatttttgtagtagtgg 234  Q
    |||||| |||||||||||||||||||||||||||||    
T  29284894 aaaaagcgctatataagcccatttttgtagtagtgg 29284859  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 29285069 - 29285019
Alignment:
Q  137 ttagatggcgtttattattgaaagcgctaactaaggagaatctttgctagc 187  Q
    |||||||||||||||| || ||||||||| ||||||| || ||||||||||    
T  29285069 ttagatggcgtttatttttaaaagcgctatctaaggaaaacctttgctagc 29285019  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 42936323 - 42936268
Alignment:
Q  51 aagcgctatctaaacctagtgttacatagcg-ttttaaaacaaaagacgctattttt 106  Q
    ||||| ||||||||| || |||||||||||| ||||||||||||| |||||||||||    
T  42936323 aagcgttatctaaacatattgttacatagcgcttttaaaacaaaa-acgctattttt 42936268  T

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