View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1700_low_16 (Length: 325)

Name: NF1700_low_16
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1700_low_16
NF1700_low_16
[»] chr7 (1 HSPs)
chr7 (1-296)||(47116595-47116890)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 47116890 - 47116595
Alignment:
Q  1 ctttgataaaatataactattgtaattgcctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtat 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  47116890 ctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtat 47116791  T
Q  101 gaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaaattttcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47116790 gaggaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaacttttcttt 47116691  T
Q  201 gtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116690 gtaactgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat 47116595  T

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