View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1700_low_21 (Length: 300)
Name: NF1700_low_21
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 50342140 - 50342346
Alignment:
| Q |
11 |
cagagaaaaggaagatggatgattcacaaaattgcactattctttatttcattaagatcactattcataaattttgcaacagtagtaattaattgagttg |
110 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50342140 |
cagagaaaaggaagagggatgattcataaaattgcactattctttatttcattaagatcactattcataaattttgcaacagtagtaattaattgagttg |
50342239 |
T |
|
| Q |
111 |
gttagttacagctaactccaacactaactaatacatttaaattactttttaacacttcccttcaattcaaatgtagtctcaatgtgtttgctctttccat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50342240 |
gttagttacagctaactccaacactaactaatacatttaaattactttttaacacttcccttcaattcaaatgtagtctcaatgtgtttgctctttccat |
50342339 |
T |
|
| Q |
211 |
gagacac |
217 |
Q |
| |
|
||||||| |
|
|
| T |
50342340 |
gagacac |
50342346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University