View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_28 (Length: 250)
Name: NF1700_low_28
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 36877027 - 36877259
Alignment:
| Q |
1 |
caagagtcatcggcctatctggaattggcggaacttcaatatctccttctaacatcttcaatgcatccaaaattgttggccttgaatcagctattacatg |
100 |
Q |
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| T |
36877027 |
caagagtcatcggcctatctggaattggctgaacttcaatatctccttctaacatcttcaatgcatccaaaattgttggccttgaatcagctattacatg |
36877126 |
T |
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| Q |
101 |
agaagacagaattccaaccagcaaaaacctctccattatattcctactattggattttccatcatccaccaagatagaagcatcgaaagcttctgctagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36877127 |
agaagacagaattccaaccagcaaaaacctctccattatattcctactattggattttccatcatccaccaagatagaagcatcgaaagcttctgctagg |
36877226 |
T |
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| Q |
201 |
tttcctgatttcattaacgaccaaacccaatcc |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36877227 |
tttcctgatttcattaacgaccaaacccaatcc |
36877259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 36870458 - 36870581
Alignment:
| Q |
16 |
tatctggaattggcggaacttcaatatctccttctaacatcttcaatgcatccaaaattgttggccttgaatcagctattacatgagaagacagaattcc |
115 |
Q |
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|||||||||||| ||||| ||||| || ||||||| ||||||||| |||||||||||||| |||||| || || ||| ||||||| | ||| |||||| |
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| T |
36870458 |
tatctggaattgatggaacctcaatgtccccttctagcatcttcaaagcatccaaaattgtgggccttaaagcaactactacatgacagcacaaaattcc |
36870557 |
T |
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| Q |
116 |
aaccagcaaaaacctctccattat |
139 |
Q |
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||||| |||||| ||||||||||| |
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| T |
36870558 |
aaccatcaaaaatctctccattat |
36870581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 718956 - 718818
Alignment:
| Q |
1 |
caagagtcatcggcctatctggaattggcggaacttcaatatctccttctaacatcttcaatgcatccaaaattgttggccttgaatcagctattacatg |
100 |
Q |
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|||||| ||| ||||||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| ||||||||||||| || || | |||||||| |
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| T |
718956 |
caagaggcataggcctatctggaatttgaggaacttcaatatcaccttccaacatcttcaaagcatcggaaattgttggcctcaaagcaaccattacatg |
718857 |
T |
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| Q |
101 |
agaagacagaattccaaccagcaaaaacctctccattat |
139 |
Q |
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|||| | ||||||||||| || |||||||| |||||||| |
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| T |
718856 |
agaacatagaattccaacaagtaaaaacctttccattat |
718818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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