View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_29 (Length: 247)
Name: NF1700_low_29
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_29 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 44949684 - 44949469
Alignment:
| Q |
15 |
atgaatagagaaataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaa |
114 |
Q |
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| T |
44949684 |
atgaatagagaaataaaccttcctactactgtgttgaataaatccctaaaggcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaa |
44949585 |
T |
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| Q |
115 |
acaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgatgggaagcttgatatgggttttat |
214 |
Q |
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| T |
44949584 |
acgaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcatttttatagtgatgggaagcttgatacgggttttat |
44949485 |
T |
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| Q |
215 |
agatgctctaaagaag |
230 |
Q |
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| T |
44949484 |
agatgctctaaagaag |
44949469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 6470464 - 6470321
Alignment:
| Q |
84 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
183 |
Q |
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| T |
6470464 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
6470365 |
T |
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| Q |
184 |
atagtgatgggaagcttgatatgggttttatagatgctctaaag |
227 |
Q |
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| T |
6470364 |
acagtgaagggagtcttgatacggtttttatagacgctctaaag |
6470321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 44943804 - 44943742
Alignment:
| Q |
66 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaagatataaag |
128 |
Q |
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| T |
44943804 |
gcacttgtagaaaagtatagtatggtaaaggaagttcctaacattcaaaacaaaggtataaag |
44943742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 419220 - 419365
Alignment:
| Q |
84 |
agtatggtaaaggaagttcctaacattcaaaacaaagatataaagcactacatggcagcagaacttgagccttcagaggatatcactggtgggcattttt |
183 |
Q |
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||||||||||||||| ||||| |||| ||||||||| ||||||| |||||||| | ||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
419220 |
agtatggtaaaggaacttccttccattaaaaacaaaggtataaagatctacatgggaacagaatttgagccttcgaaggatataactggtgggcattttt |
419319 |
T |
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| Q |
184 |
atagtgatgggaagcttgatatgggttttatagatgctctaaagaa |
229 |
Q |
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| T |
419320 |
acagcgaagggagtcttgatacggtttttatagatgctctaaagaa |
419365 |
T |
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