View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1700_low_4 (Length: 498)
Name: NF1700_low_4
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 5 - 483
Target Start/End: Complemental strand, 39579663 - 39579185
Alignment:
| Q |
5 |
gggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39579663 |
gggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaag |
39579564 |
T |
|
| Q |
105 |
ggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39579563 |
ggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaag |
39579464 |
T |
|
| Q |
205 |
gcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccactaatatattg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39579463 |
gcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccactaatatattg |
39579364 |
T |
|
| Q |
305 |
cttgatgagaatcttgtagctaaagttgctgattttggcctttcaagggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaaggaactt |
404 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39579363 |
cttgatgagaatcttgttgctaaagttgctgattttggcctttcaaaggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaagggactt |
39579264 |
T |
|
| Q |
405 |
ttgggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttct |
483 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39579263 |
ttgggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttct |
39579185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 39575131 - 39574652
Alignment:
| Q |
1 |
gccagggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgat |
100 |
Q |
| |
|
|||||| ||||||||||||| || ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39575131 |
gccaggttcaggtcaaggacgtcatgaatttcaaactgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgcatattgtgat |
39575032 |
T |
|
| Q |
101 |
gaagggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagc |
200 |
Q |
| |
|
||| ||| |||||||||||||||||| || || |||||||| |||||||||| ||| ||||||||| ||| || ||||||| |||| ||||||||||| |
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|
| T |
39575031 |
gaaaggtgtgagatgatacttgtttacgagtacatggaaaatgggacacttagagataatttgtacgatacaaatttgccttgttt---gacttggaagc |
39574935 |
T |
|
| Q |
201 |
aaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccactaatat |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
39574934 |
aaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccactaatat |
39574835 |
T |
|
| Q |
301 |
attgcttgatgagaatcttgtagctaaagttgctgattttggcctttcaagggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaagga |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
39574834 |
attgcttgacgagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaaaggg |
39574735 |
T |
|
| Q |
401 |
acttttgggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttct |
483 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
39574734 |
acttttgggtatcttgatccggattactttagatcacaacagcttacagaaaaatccgatgtttactcttttggggtggttct |
39574652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 39543289 - 39542817
Alignment:
| Q |
8 |
tcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgatgaagggt |
107 |
Q |
| |
|
||||||||||||| | ||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
39543289 |
tcaggtcaaggacaacatgaatttcaaactgagataatggttctgtccaagattcgtcacaaacaccttgtttccttaatagggtattgtgatgaaaggt |
39543190 |
T |
|
| Q |
108 |
atgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagcaaaggct |
207 |
Q |
| |
|
||||||||||||||||||||| || |||||||| || ||||||| |||||||| ||||||| || ||||||| |||| |||||||||||||||||| |
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|
| T |
39543189 |
gtgagatgatacttgtttatgagtacatggaaaatggtacacttagggagaatttatacaatacaaatttgccttgttt---gacttggaagcaaaggct |
39543093 |
T |
|
| Q |
208 |
tgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccactaatatattgctt |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
39543092 |
tgagatttgcattggtgctgctagaggtcttcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccactaatatattgctt |
39542993 |
T |
|
| Q |
308 |
gatgagaatcttgtagctaaagttgctgattttggcctttcaagggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaaggaacttttg |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||| |
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|
| T |
39542992 |
gatgagaatcttgtagctaaagttgctgattttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttg |
39542893 |
T |
|
| Q |
408 |
ggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttct |
483 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39542892 |
ggtatcttgatcctgattactttagagcacaacagcttacagaaaaatctgatgtttattcttttggggtggttct |
39542817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 39510234 - 39509752
Alignment:
| Q |
1 |
gccagggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39510234 |
gccagggtcaggtcaaggactacctgaatttcagactgagataatggttttgtcaaagattcgtcatcgacaccttgtttccttaattgggtattgtgat |
39510135 |
T |
|
| Q |
101 |
gaagggtatgagatgatacttgtttatgaatatatggaaaaagggacacttaaagagaatttgtacaataaaagtttgcctagttttttgacttggaagc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||| || |||||||| |||||||||||||| | |||||| | || |||||||||||| ||||||||||||| |
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|
| T |
39510134 |
gaaaggtatgagatgatacttgtttatgagtacatggaaaaggggacacttaaagaaagtttgtaaggtgcaaatttgcctagtttcttgacttggaagc |
39510035 |
T |
|
| Q |
201 |
aaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccactaatat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||| || |
|
|
| T |
39510034 |
aaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcacaaaggagcagctggtggaatcattcaccgcgatgtgaagtccactaacat |
39509935 |
T |
|
| Q |
301 |
attgcttgatgagaatcttgtagctaaagttgctgattttggcctttcaagggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaagga |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||| |||||||||||||| ||| |
|
|
| T |
39509934 |
attgcttgatgagcatcttgtagctaaagttgctgattttggtctttcaagaactggtcctcttgatcagcattcttatgtcagcacaggtgttaaggga |
39509835 |
T |
|
| Q |
401 |
acttttgggtatcttgatcctgattactttagatcactacaccttacagaaaaatccgatgtttattcttttggggtggttct |
483 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||||| ||| |||||||||||||| ||||| ||||| || || |||||||| |
|
|
| T |
39509834 |
actttcggttatctcgatcctgagtactttagatcacaacagcttacagaaaaatctgatgtgtattcattcggcgtggttct |
39509752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 39520492 - 39520341
Alignment:
| Q |
1 |
gccagggtcaggtcaaggacttcctgaatttgaagctgagataatggttttgtccaagattcgtcacatacaccttgtttccttaattgggtattgtgat |
100 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
39520492 |
gccaggatcaggtcaaggtctgcctgaatttcagactgagataatggttttgtccaagattcgtcatcggcatcttgtttccttaattgggtattgtgat |
39520393 |
T |
|
| Q |
101 |
gaagggtatgagatgatacttgtttatgaatatatggaaaaagggacactta |
152 |
Q |
| |
|
||| ||||||||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
39520392 |
gaaaggtatgagatgatacttgtttatgagtacatggaaaaggggacactta |
39520341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 46271665 - 46271722
Alignment:
| Q |
194 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
251 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||| ||||||| || || ||||||| |
|
|
| T |
46271665 |
tggaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcaca |
46271722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 35904726 - 35904669
Alignment:
| Q |
194 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
251 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
35904726 |
tggaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca |
35904669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 27539427 - 27539484
Alignment:
| Q |
194 |
tggaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca |
251 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||| ||||||| || || ||||||| |
|
|
| T |
27539427 |
tggaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcaca |
27539484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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