View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1700_low_6 (Length: 452)
Name: NF1700_low_6
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 1240764 - 1241156
Alignment:
| Q |
18 |
gaaggaaatgatggcaagtgcagattcaggtatttgaacaagcttgttcaaggagataggatcaacttcaggagaagaagcagatacttgaacaaatagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240764 |
gaaggaaatgatggcaagtgcagattcaggtatttgaacaagcttgttcaaggagataggatcaacttcaggagaagaagcagatacttgaacaaatagg |
1240863 |
T |
|
| Q |
118 |
gttgtgaagagaggaacaatgaaagtaaggaagatgaaggaaacataagaaatgagttttccaacacaagatgagtgatcaagagcacaccatttaagac |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240864 |
gttgtgaagagaggaacaacgaaagtaaggaagatgaaggaaacataagaaatgagttttccaacacaagatgagtgatcaagagcacaccatttaagac |
1240963 |
T |
|
| Q |
218 |
atatccgaaagtttcttagttcatcaaagatcatggattttgatcttgcataagatggttgaagtaacaaaggaacattgtgttggtgctgttgctgttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240964 |
atatccgaaagtttcttagttcatcaaagatcatggattttgatcttgcataagatggctgaagtaacaaaggaacattgtgttggtgctgttgctgttg |
1241063 |
T |
|
| Q |
318 |
gtcagagaaagatactcttttggaagatgaattatcaatgtcaatggctgtgtccttggttgattctgttgaaggtttcatattgagtttttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1241064 |
gtcagagaaagatactcttttggaagatgaattatcaatgtcaatggttgtgtccttggttgattctgttgaaggtttcatattgagtttttt |
1241156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University