View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_7 (Length: 448)
Name: NF1700_low_7
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 1936567 - 1936991
Alignment:
| Q |
18 |
aatttagtcctgtatcaagcaaaacgatgtggtctataataacgaatcccattaaaaccatcatttcaaatatcatacaccatgccatccataaagattt |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1936567 |
aatttagtcctgtatcaagcaaaaccatgtggtctataataacgaatcccattaaaaccatcatttcaaatatcatacaccatgccatccataaagattt |
1936666 |
T |
|
| Q |
118 |
ccatgcagcagtggcaaaaatgtccatcatagatgcttttctcttccttgtataaatacttttcttcatcatatcatatatattgtttttgttatttttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1936667 |
ccatgcagcagtggcaaaaatgtccatcatagatgcttttctcttccttgtataaatacttttcttcatcatatcatatatattgtttttgttatttttc |
1936766 |
T |
|
| Q |
218 |
ataatttaatccttgataattgggaatatggatcaaattgttatcgcatcaatggtgtttttctttatagaa-----tggataagtctataaaacaaggt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1936767 |
ataatttaatccttgataattgggaatatggatcaaattgttatcgcatcaatggtgtttttctttatagaaccaggtggataagtctataaaacaaggt |
1936866 |
T |
|
| Q |
313 |
ggataagctgttaaaactgaaaaatagttataacctagtttatagggtttgaatcaggaagaagaagaatagagagaattaagttatatttaaagtctat |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1936867 |
ggataagctgttaaaactggaaaatagttataacctagtttatagggtttgaatcaggaagaagaagaatagagagaattaagttatatttaaagtctat |
1936966 |
T |
|
| Q |
413 |
ttactaaagtatcaaaatgtttcat |
437 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
1936967 |
ttactaaagtattaaaatgtttcat |
1936991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 1922904 - 1922997
Alignment:
| Q |
95 |
caccatgccatccataaagatttccatgcagcagtggcaaaaatgtccatcatagatgcttttctcttccttgtataaatacttttcttcatca |
188 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||| | |||||||||||| | ||||||||||||||| |||| |||||| |||||||||| |
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| T |
1922904 |
caccattccatccataaagatttccatgaagcagtgaccaaaatgtccatctttgatgcttttctcttctatgtacaaatacccttcttcatca |
1922997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 1952146 - 1952213
Alignment:
| Q |
92 |
atacaccatgccatccataaagatttccatgcagcagtggcaaaaatgtccatcatagatgcttttct |
159 |
Q |
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||||| ||| || |||||||||||||||||| || |||| |||||| ||||||||||||||||||| |
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| T |
1952146 |
atacaacattccttccataaagatttccatgaagtagtgaagaaaatgaccatcatagatgcttttct |
1952213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 26903746 - 26903614
Alignment:
| Q |
253 |
aattgttatcgcatcaatggtgtttttctttatagaa-----tggataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataacc |
347 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
26903746 |
aattgttaacgtagcaatggtgtttttctttatagaactaggtggataagcctatagaacaagatggataagctgttaaaactgaaaaacagttataacc |
26903647 |
T |
|
| Q |
348 |
tagtttatagggtttgaatcaggaagaagaaga |
380 |
Q |
| |
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| |||| |||||||||||||||||||||||||| |
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| T |
26903646 |
tggtttctagggtttgaatcaggaagaagaaga |
26903614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 26905638 - 26905519
Alignment:
| Q |
267 |
caatggtgtttttctttatagaa-----tggataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataacctagtttatagggtt |
361 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||||| |||| |||||||||||||||| ||| || |
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| T |
26905638 |
caatggtgtttttctctatagaaccaggtggataagcctatagaacaaggtggataaactgttaaaactggaaaacagttataacctagtttctagagta |
26905539 |
T |
|
| Q |
362 |
tgaatcaggaagaagaagaa |
381 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
26905538 |
tggatcaggaagaagaagaa |
26905519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 318
Target Start/End: Original strand, 24519958 - 24520025
Alignment:
| Q |
256 |
tgttatcgcatcaatggtgtttttctttataga-----atggataagtctataaaacaaggtggataa |
318 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||| |
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| T |
24519958 |
tgttagcgcatcaatggtgtttttctatatagatacagatggataagcctatagaacaaggtggataa |
24520025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 24520635 - 24520724
Alignment:
| Q |
292 |
gataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataacctagtttatagggtttgaatcaggaagaagaagaa |
381 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||| |||||| || | | ||||||||| ||| ||| |||| ||||||||||||||||| |
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|
| T |
24520635 |
gataagtctatagaacatggtggataaactgtcaaaactctaagacaattataacctgatttctagattttggatcaggaagaagaagaa |
24520724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 381
Target Start/End: Original strand, 4223877 - 4224008
Alignment:
| Q |
254 |
attgttatcgcatcaatggtgtttttctttatagaa-----tggataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataacct |
348 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| |||||||| | ||| |||||||| ||||| |||| ||||||| || | || |||||||| |
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| T |
4223877 |
attgttagcgcatcaatggtgtttt-ctctatagaactaggtggataagccaatagaacaaggtagataaactgtcaaaactggaagacagctataacct |
4223975 |
T |
|
| Q |
349 |
agtttatagggtttgaatcaggaagaagaagaa |
381 |
Q |
| |
|
||| ||| |||| ||||||||||| ||||| |
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| T |
4223976 |
gatttctagattttgcatcaggaagaaaaagaa |
4224008 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 393
Target Start/End: Original strand, 34998470 - 34998613
Alignment:
| Q |
256 |
tgttatcgcatcaatggtgtttttctttatagaa-----tggataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataacctag |
350 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||| |||| ||||||||||| | |
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|
| T |
34998470 |
tgttagcgcagcaatggtgtttttctttatagaaccaggtggataagcctataa--caaggtggataaactgttaaaactggaaaacagttataacctgg |
34998567 |
T |
|
| Q |
351 |
tttatagggtttgaatcaggaagaagaaga----atagagagaatta |
393 |
Q |
| |
|
||| ||||||||| | |||||||||||||| ||||||||||||| |
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|
| T |
34998568 |
tttctagggtttgga-caggaagaagaagatagaatagagagaatta |
34998613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 15955052 - 15955155
Alignment:
| Q |
255 |
ttgttatcgcatcaatggtgtttttctttatagaat-----ggataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataaccta |
349 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||| ||||||| ||||| |||| | ||||||| ||||||||||||||||| ||| |||| ||| |
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|
| T |
15955052 |
ttgttagcgcaacaatggtgtttttctctatagaatcaggtggataagcctatagaacaggatggataaactgttaaaactgaaaaacagtaataatcta |
15955151 |
T |
|
| Q |
350 |
gttt |
353 |
Q |
| |
|
|||| |
|
|
| T |
15955152 |
gttt |
15955155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 25480078 - 25480022
Alignment:
| Q |
290 |
tggataagtctataaaacaaggtggataagctgttaaaactgaaaaatagttataac |
346 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
25480078 |
tggataagcctatagaacaaggtggataaactgttaaaactggaaaacagttataac |
25480022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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