View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_8 (Length: 437)
Name: NF1700_low_8
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 39426643 - 39426961
Alignment:
| Q |
18 |
taaaagaaggggaaatcttcattactcttctcaattcacaattttaggtgggttttgggtgaaattatgttctcctatttccataaagtgattatgtttt |
117 |
Q |
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| T |
39426643 |
taaaagaaggggaaatcttcattactcttctccattcacaattttaggtgggttttgggtgaaattatgttctcctatttccataaagtgattatgtttt |
39426742 |
T |
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| Q |
118 |
aagaaattacatagtaaaaataaatgggttatgttgcatgcattgaaattgttttgctcctgtgtagaaattcacgagtgccatgttaaatttccaaatt |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
39426743 |
aagaaattacataataaaaataaatgggttatgttgcatgcattgaaattgttttgctcttgtgtagaaattcatgagtgccatgttaaatttccaaatt |
39426842 |
T |
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| Q |
218 |
acattctccttggttccaaaatttgtcattttgaactattttatgatgtccaatgttgtgctacattctccttggttccaagttactttgaatccataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39426843 |
acattctccttggttccaaaatttgtcattttgaactattttatgatgtccaatgttgtgctacattctccttggttccaagttactttgaatccataat |
39426942 |
T |
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| Q |
318 |
atcatcataataatttatt |
336 |
Q |
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||||||||||||| ||||| |
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| T |
39426943 |
atcatcataataacttatt |
39426961 |
T |
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