View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700_low_9 (Length: 402)
Name: NF1700_low_9
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 8648641 - 8648972
Alignment:
| Q |
17 |
aacatcatatatgacaaaattgttcaaagtacttgcatttgttcatatcaaatatgttgtgttgtgctgccttgtgatgtgttgttttgtcttatgacgt |
116 |
Q |
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| T |
8648641 |
aacatcatatatgacaaaattgttcaaagtacttgcatttgttcatatcaaatatgttgtgttgtgctgccttgtgatgtgttgttttgtcttatgacgt |
8648740 |
T |
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| Q |
117 |
tctgtcaagtacttaccttttaacagatcaaacatgtcccaaacgatttagatttgtgattgtgaccacgcaaaaattattctaatgtaagacatattca |
216 |
Q |
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| T |
8648741 |
tctatcaagtacttaccttttaacagat-aaacatgtcccaaacgatttagatttgtgattgtaaccacgcaaaaattattctaatgtaagacatattca |
8648839 |
T |
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| Q |
217 |
acactcaacattgtataaaattagcaaacttaagcatcatttagtagatcaaaacatcagtcnnnnnnnaaattaaaaacattccatctttttagggaaa |
316 |
Q |
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| T |
8648840 |
acactcaacattgtataaaattagcaaacttaagcatcatttagtagatcaaaacatcagtctttttttaaattaaaaacattccatctttttagggaaa |
8648939 |
T |
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| Q |
317 |
aatattccattttattgtactcaataagatcag |
349 |
Q |
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| T |
8648940 |
aatattccattttattgtactcaataagatcag |
8648972 |
T |
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