View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701-Insertion-1 (Length: 363)

Name: NF1701-Insertion-1
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701-Insertion-1
NF1701-Insertion-1
[»] chr8 (21 HSPs)
chr8 (10-363)||(10405046-10405394)
chr8 (10-85)||(13286123-13286198)
chr8 (12-85)||(11708980-11709054)
chr8 (9-85)||(24023408-24023485)
chr8 (11-63)||(23852904-23852956)
chr8 (11-63)||(33445563-33445615)
chr8 (11-63)||(39821877-39821929)
chr8 (12-63)||(8544615-8544666)
chr8 (11-85)||(29716693-29716768)
chr8 (16-85)||(8461829-8461899)
chr8 (12-85)||(20665356-20665429)
chr8 (12-85)||(27587215-27587289)
chr8 (12-85)||(30550719-30550792)
chr8 (12-85)||(44215468-44215541)
chr8 (13-62)||(5728533-5728582)
chr8 (13-85)||(17704008-17704081)
chr8 (12-85)||(44084265-44084338)
chr8 (11-63)||(27191751-27191803)
chr8 (18-85)||(32051525-32051593)
chr8 (12-68)||(33105385-33105441)
chr8 (24-76)||(40919362-40919414)
[»] chr5 (20 HSPs)
chr5 (13-85)||(16701574-16701647)
chr5 (11-85)||(6489000-6489075)
chr5 (10-61)||(27721693-27721744)
chr5 (11-85)||(34436844-34436919)
chr5 (12-85)||(34191427-34191501)
chr5 (12-85)||(11720888-11720961)
chr5 (12-63)||(15889405-15889456)
chr5 (11-85)||(22522794-22522869)
chr5 (11-85)||(42473887-42473962)
chr5 (10-79)||(5015273-5015342)
chr5 (12-85)||(37462106-37462179)
chr5 (12-61)||(5485180-5485229)
chr5 (10-63)||(31591553-31591606)
chr5 (13-85)||(33412086-33412159)
chr5 (10-63)||(35270697-35270750)
chr5 (11-68)||(37932323-37932380)
chr5 (11-85)||(4009859-4009935)
chr5 (10-85)||(6624768-6624844)
chr5 (12-68)||(18589878-18589934)
chr5 (11-63)||(24408488-24408540)
[»] chr3 (17 HSPs)
chr3 (10-84)||(43777051-43777125)
chr3 (12-85)||(18870718-18870792)
chr3 (11-85)||(9598432-9598507)
chr3 (12-63)||(33223862-33223913)
chr3 (12-85)||(916434-916507)
chr3 (11-61)||(1757687-1757737)
chr3 (12-85)||(29631180-29631254)
chr3 (18-63)||(6901470-6901515)
chr3 (12-61)||(7868716-7868765)
chr3 (10-63)||(16980370-16980423)
chr3 (13-85)||(25340917-25340990)
chr3 (11-63)||(1149085-1149137)
chr3 (11-63)||(10498711-10498763)
chr3 (24-80)||(35548287-35548343)
chr3 (53-85)||(38024329-38024361)
chr3 (11-63)||(41291717-41291769)
chr3 (15-63)||(43490433-43490481)
[»] chr2 (18 HSPs)
chr2 (11-85)||(3197073-3197147)
chr2 (12-85)||(10735824-10735898)
chr2 (12-85)||(44526122-44526196)
chr2 (12-85)||(3708688-3708761)
chr2 (11-84)||(7206118-7206192)
chr2 (12-85)||(11868655-11868728)
chr2 (12-85)||(24592839-24592913)
chr2 (12-85)||(29544621-29544695)
chr2 (12-85)||(34977198-34977272)
chr2 (12-85)||(35360048-35360121)
chr2 (12-85)||(35820294-35820368)
chr2 (12-61)||(7201501-7201550)
chr2 (15-68)||(20565086-20565139)
chr2 (10-63)||(27244649-27244702)
chr2 (10-85)||(346117-346193)
chr2 (45-85)||(9581280-9581320)
chr2 (12-68)||(17328017-17328073)
chr2 (10-85)||(33063978-33064054)
[»] chr1 (14 HSPs)
chr1 (10-85)||(42045365-42045441)
chr1 (12-63)||(37098497-37098548)
chr1 (7-63)||(21400039-21400095)
chr1 (11-63)||(37045162-37045214)
chr1 (10-85)||(41763148-41763224)
chr1 (12-63)||(48681949-48682000)
chr1 (9-85)||(3481551-3481629)
chr1 (12-85)||(17139510-17139584)
chr1 (15-83)||(16533028-16533097)
chr1 (11-85)||(19795109-19795185)
chr1 (10-63)||(21341174-21341229)
chr1 (11-63)||(30795694-30795746)
chr1 (11-85)||(39452453-39452529)
chr1 (12-79)||(44243867-44243935)
[»] scaffold0040 (1 HSPs)
scaffold0040 (11-85)||(56777-56851)
[»] chr4 (18 HSPs)
chr4 (10-63)||(50362155-50362208)
chr4 (12-68)||(20799405-20799461)
chr4 (11-85)||(7230273-7230348)
chr4 (8-63)||(52270046-52270101)
chr4 (12-85)||(10261762-10261835)
chr4 (12-85)||(21562620-21562693)
chr4 (12-85)||(26926703-26926776)
chr4 (12-85)||(35287500-35287574)
chr4 (12-85)||(43330141-43330214)
chr4 (12-85)||(51450207-51450280)
chr4 (10-63)||(2186349-2186402)
chr4 (12-84)||(14577501-14577574)
chr4 (11-68)||(23304027-23304084)
chr4 (11-85)||(2888866-2888942)
chr4 (49-85)||(3648897-3648933)
chr4 (18-85)||(3936627-3936695)
chr4 (11-63)||(21449914-21449966)
chr4 (49-85)||(56204978-56205014)
[»] chr7 (19 HSPs)
chr7 (13-77)||(3953436-3953500)
chr7 (13-85)||(10326949-10327021)
chr7 (11-85)||(19416507-19416582)
chr7 (11-85)||(27462429-27462504)
chr7 (12-79)||(46207754-46207821)
chr7 (16-85)||(3671822-3671892)
chr7 (10-68)||(7670426-7670484)
chr7 (12-85)||(20763149-20763222)
chr7 (12-85)||(29488715-29488788)
chr7 (12-85)||(33232390-33232463)
chr7 (12-85)||(34284532-34284605)
chr7 (15-80)||(18505656-18505721)
chr7 (10-85)||(7388032-7388108)
chr7 (12-68)||(10244721-10244777)
chr7 (10-85)||(19626518-19626594)
chr7 (9-84)||(20576404-20576480)
chr7 (12-84)||(21993176-21993248)
chr7 (11-63)||(22600424-22600476)
chr7 (10-85)||(46737777-46737853)
[»] chr6 (11 HSPs)
chr6 (10-85)||(21296750-21296825)
chr6 (8-63)||(32053778-32053833)
chr6 (12-85)||(247654-247727)
chr6 (10-64)||(1514176-1514230)
chr6 (10-64)||(10780122-10780176)
chr6 (7-80)||(13496105-13496179)
chr6 (11-68)||(9111040-9111097)
chr6 (10-63)||(9444949-9445002)
chr6 (11-63)||(866301-866353)
chr6 (15-63)||(33938695-33938743)
chr6 (11-63)||(34701140-34701192)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-84)||(239801-239874)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 10405046 - 10405394
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccacgnnnnnnnnntaacttgtgtgata 109  Q
    |||||||||||| |||||||| || |||||| |||||||| ||||||||||||| | ||||||||||| ||||||||          ||       ||||    
T  10405046 atgtcctcgtgaacttagctcggttggtggggaccatgaaaaatatatgcaaggtctggattcaaacctcggccacgaaa-------aa-------gata 10405131  T
Q  110 tctacgaaattggcttatattgcagtagatagtggaaatctttataggagtgtgagttctcta---------gttgaataaagaagaagcacgatcaccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||    
T  10405132 tctacgaaattggcttatattgcagtagatagtggaaatctttataggagtgtgaattctctatttggaagtgttgaataaagaagaagcacgatcaccg 10405231  T
Q  201 tcaattttcgagaaggaatgtatctgaaaattggtgcattccaccttcgagctcctcgatctggattatacagccaagttccaagattgataaatctttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10405232 tcaattttcgagaaggaatgtatctgaaaattggtgcattccaccttcgagctcctcgatctggattatacagccaagttccaagattgataaatctttt 10405331  T
Q  301 gaagatatataaacttgtcagcatgctactagctattatacataggtgtgatcaattgctcta 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10405332 gaagatatataaacttgtcagcatgctactagctattatacataggtgtgatcaattgctcta 10405394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 13286123 - 13286198
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    |||||||||||||||||||||||| |||    || ||| ||||||||||||||  |||| ||||||||||||||||    
T  13286123 atgtcctcgtgagcttagctcagttggtatagacaatgcataatatatgcaagatccgggttcaaaccccggccac 13286198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 11708980 - 11709054
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||||||| ||| || || ||| ||||||||||||||| ||| | ||||||||||| ||||    
T  11708980 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccgaccac 11709054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 24023485 - 24023408
Alignment:
Q  9 aatgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||||||  || ||||| ||| |||| |||||||||| || || ||||||||||| ||||    
T  24023485 aatgtcctcgtgagcttagctcagttagttggaacaatgcataaaatatgcaaggtccggggttcaaaccccgaccac 24023408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 23852904 - 23852956
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||||||  | || ||| |||||||||||||||    
T  23852904 tgtcctcgtgagcttagctcagtcggtatggacaatgcataatatatgcaagg 23852956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 33445563 - 33445615
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||||| |||||    
T  33445563 tgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatacaagg 33445615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 39821877 - 39821929
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||||||| ||| || || ||| |||||||||||||||    
T  39821877 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 39821929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 8544666 - 8544615
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||||| ||||  ||| |||| ||||||||||    
T  8544666 gtcctcgtgagcttagctcagtcggttggaataatgtataaaatatgcaagg 8544615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 29716768 - 29716693
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||| ||||||||||| |||||| ||| ||||| ||  ||||||||||||||| || |||||||||| ||||||||    
T  29716768 tgtcatcgtgagcttaactcagttggtaggaacaattcataatatatgcaaggtccgggattcaaactccggccac 29716693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 8461899 - 8461829
Alignment:
Q  16 tcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| || || ||| |||| |||||||||| ||||| ||||||||||| ||||    
T  8461899 tcgtgagcttagctcagttggttgggacaatgcataaaatatgcaaggtccggagttcaaaccccgaccac 8461829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 20665429 - 20665356
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  20665429 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 20665356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 27587215 - 27587289
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| |||  | || ||| || |||||||||||| || || ||||||||||||||||    
T  27587215 gtcctcgtgagcttagctcagttggtaaggacaatgcatgatatatgcaaggtccggggttcaaaccccggccac 27587289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 30550792 - 30550719
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  30550792 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 30550719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 44215541 - 44215468
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  44215541 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 44215468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 5728533 - 5728582
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaag 62  Q
    ||||||||||||||||||||| | || |||| ||| ||||||||||||||    
T  5728533 tcctcgtgagcttagctcagttgatgagaacaatgcataatatatgcaag 5728582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 17704008 - 17704081
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccg-gattcaaaccccggccac 85  Q
    ||||||||||||||||||||| |||  | || ||| ||||||||||||||| | | |||||||||| |||||||    
T  17704008 tcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtctgtgattcaaacctcggccac 17704081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 44084338 - 44084265
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||| | |||||||| | |  |||| ||| ||||||||||||||| |||| |||||||| |||||||    
T  44084338 gtcctcgtgagttaagctcagttgattagaacaatgcataatatatgcaaggtccgggttcaaacctcggccac 44084265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 27191751 - 27191803
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||||||| |||  |||| ||  |||||||||||||||    
T  27191751 tgtcctcgtgagcttagctcagttggtaagaacaattcataatatatgcaagg 27191803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 32051593 - 32051525
Alignment:
Q  18 gtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||| |||  | || ||| ||||||||||||||| || || ||||||||||||||||    
T  32051593 gtgagcttagctcagttggtttggacaatgcataatatatgcaaggtccggggttcaaaccccggccac 32051525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 33105385 - 33105441
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    |||||||||||||||||||||  |||  |||| ||| ||||||||||||||| ||||    
T  33105385 gtcctcgtgagcttagctcagctggtttgaacaatgcataatatatgcaaggtccgg 33105441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 40919414 - 40919362
Alignment:
Q  24 ttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaac 76  Q
    |||||||||| ||| ||||| ||| ||||||||||||||| |||| |||||||    
T  40919414 ttagctcagttggtaggaacaatgcataatatatgcaaggtccgggttcaaac 40919362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 16701647 - 16701574
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||| ||| || || ||||||||||||||||||| || |||||||||||||| ||||    
T  16701647 tcctcgtgagcttagctcagttggtagggacaatgaataatatatgcaaggtccgggattcaaaccccgaccac 16701574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 6489000 - 6489075
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggac-cggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| ||| || || ||| ||||||||||||||| |  || ||||||||||||||||    
T  6489000 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccac 6489075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 27721744 - 27721693
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaa 61  Q
    |||||||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  27721744 atgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatgcaa 27721693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 34436844 - 34436919
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| ||| || || ||| ||||||||||||||| || || ||||||||||| ||||    
T  34436844 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagggccggggttcaaaccccgcccac 34436919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 34191427 - 34191501
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| ||| || || ||| |||| |||||||||| || || ||||||||||||||||    
T  34191427 gtcctcgtgagcttagctcagttggttgggacaatgcataaaatatgcaaggtccggggttcaaaccccggccac 34191501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 11720888 - 11720961
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||| ||||||||| |||||| ||| || || ||| ||||||||||||||| | || ||||||||||||||||    
T  11720888 gtccttgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtcggggttcaaaccccggccac 11720961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 15889405 - 15889456
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||| ||| || || ||| |||||||||||||||    
T  15889405 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 15889456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 22522869 - 22522794
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||| || |||  | || ||| ||||||||||||||| || || ||||||||||||||||    
T  22522869 tgtcctcgtgagcttagctcggttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccac 22522794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 42473887 - 42473962
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||| | | | ||||| ||| ||||||||||||||| || || |||||||| |||||||    
T  42473887 tgtcctcgtgagcttagctcaattgattggaacaatgcataatatatgcaaggtccggggttcaaaccacggccac 42473962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 5015273 - 5015342
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaacccc 79  Q
    ||||||||||||| |||||||||| ||| || || |||||||||||||||||||  |||| ||||||||||    
T  5015273 atgtcctcgtgagtttagctcagttggtagg-acaatgaataatatatgcaaggttcggagttcaaacccc 5015342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 37462106 - 37462179
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  37462106 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 37462179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5485180 - 5485229
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaa 61  Q
    |||||||||||||||||||||| ||| || || ||| |||||||||||||    
T  5485180 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaa 5485229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 31591606 - 31591553
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||| ||||||||||||||||||| ||| ||||| ||| ||| |||||||||||    
T  31591606 atgttctcgtgagcttagctcagttggtaggaacaatgcatattatatgcaagg 31591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 33412086 - 33412159
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||| |||  ||||| ||| ||||  ||| ||||||||||||||| || |||||||||||||||||||    
T  33412086 tcctcgtgagtttatgtcagttggtaggaaagatgcataatatatgcaaggtccaggattcaaaccccggccac 33412159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 35270750 - 35270697
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| ||| || || ||| |||| ||||||||||    
T  35270750 atgtcctcgtgagcttagctcagttggttgggacaatgcataaaatatgcaagg 35270697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 37932323 - 37932380
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    ||||||||||||||||||||||| |||  | || ||| ||||||||||||||| ||||    
T  37932323 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccgg 37932380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 4009859 - 4009935
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatg-aataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| |||  | || ||| | |||||||||||||| || || ||||||||||||||||    
T  4009859 tgtcctcgtgagcttagctcagttggtaaggacaatgcattaatatatgcaagggccggggttcaaaccccggccac 4009935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 6624768 - 6624844
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||||| ||   | || ||| ||||||||||||||| || || ||| ||||||||||||    
T  6624768 atgtcctcgtgagcttagctcagttggcatggacaatgcataatatatgcaaggtccggggttcgaaccccggccac 6624844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 18589934 - 18589878
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    ||||||||||||||| |||||| |||  |||| ||| ||||||||||||||| ||||    
T  18589934 gtcctcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtccgg 18589878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 24408488 - 24408540
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  24408488 tgtcctcgtgagcttagctcagttggtttggacgatgcataatatatgcaagg 24408540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 43777125 - 43777051
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggcca 84  Q
    ||||| |||||||||||||||||| ||| || |||||| |||||||||||||||  ||| |||||||| ||||||    
T  43777125 atgtcttcgtgagcttagctcagttggtagggaccatgcataatatatgcaaggttcgggttcaaacctcggcca 43777051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 18870792 - 18870718
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| ||| || || ||| ||||||||||||||| ||  |||||||||| |||||||    
T  18870792 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccatgattcaaacctcggccac 18870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 9598432 - 9598507
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccg-gattcaaaccccggccac 85  Q
    ||||||||||||||||| ||||| ||| || || ||| |||| |||||||||| ||| ||||||||||||| ||||    
T  9598432 tgtcctcgtgagcttagttcagttggttgggacaatgtataaaatatgcaaggtccgagattcaaaccccgaccac 9598507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 33223862 - 33223913
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||| ||| | ||| ||| |||||||||||||||    
T  33223862 gtcctcgtgagcttagctcagttggtagaaacaatgcataatatatgcaagg 33223913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 916434 - 916507
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  916434 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 1757737 - 1757687
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaa 61  Q
    |||||||||||||||| |||||| ||| ||||| ||| |||||||||||||    
T  1757737 tgtcctcgtgagcttaactcagttggtaggaacaatgcataatatatgcaa 1757687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29631180 - 29631254
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg-accggattcaaaccccggccac 85  Q
    |||||| ||||||||||||||| |||  | || ||| |||||||||||||||  | |||||||||||||||||||    
T  29631180 gtcctcatgagcttagctcagttggtatggacaatgcataatatatgcaaggttcgggattcaaaccccggccac 29631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 6901515 - 6901470
Alignment:
Q  18 gtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||| ||| ||||| ||| |||||||||||||||    
T  6901515 gtgagcttagctcagttggtaggaacaatgtataatatatgcaagg 6901470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 7868716 - 7868765
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaa 61  Q
    |||||||||||||||||||||| |||  |||| ||| |||||||||||||    
T  7868716 gtcctcgtgagcttagctcagttggtaagaacaatgcataatatatgcaa 7868765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 16980423 - 16980370
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  16980423 atgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 16980370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 25340990 - 25340917
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||| |||  | || ||| |||| |||||||||| || || ||||||||||||||||    
T  25340990 tcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttcaaaccccggccac 25340917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 1149137 - 1149085
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  1149137 tgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaagg 1149085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 10498763 - 10498711
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  10498763 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 10498711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 35548343 - 35548287
Alignment:
Q  24 ttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccg 80  Q
    |||||||||| |||  |||| ||| ||||||||||||||  ||||||||||||||||    
T  35548343 ttagctcagttggtatgaacaatgtataatatatgcaagctccggattcaaaccccg 35548287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 38024361 - 38024329
Alignment:
Q  53 tatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||| |||||||||||||||||||||    
T  38024361 tatatgcaaggtccggattcaaaccccggccac 38024329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 41291717 - 41291769
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||| ||||||||||| |||  |||| |||||||| ||||||||||    
T  41291717 tgtcctcgtgaacttagctcagttggtaagaacaatgaataaaatatgcaagg 41291769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 43490481 - 43490433
Alignment:
Q  15 ctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||| |||  |||| ||| |||||||||||||||    
T  43490481 ctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaagg 43490433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 3197147 - 3197073
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    |||||||||||| |||||||||| ||| || || ||| |||||||||||||||  ||||||||||||||| ||||    
T  3197147 tgtcctcgtgagtttagctcagttggtagggacaatgcataatatatgcaaggttcggattcaaaccccgaccac 3197073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 10735898 - 10735824
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| ||| || || ||| ||||||||||||||| || || ||||||||||||||||    
T  10735898 gtcctcgtgagcttagctcagttggtagggacgatgcataatatatgcaaggtccggggttcaaaccccggccac 10735824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 44526122 - 44526196
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| |||  | || ||| |||||||| |||||| || |||||||||||||||||||    
T  44526122 gtcctcgtgagcttagctcagttggtatggacaatgcataatatacgcaaggtccgggattcaaaccccggccac 44526196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 3708688 - 3708761
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  3708688 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 3708761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 7206118 - 7206192
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccg-gattcaaaccccggcca 84  Q
    ||||||||||||||||||||||| ||| |  || ||| ||||||||||||||| ||| | || ||||||||||||    
T  7206118 tgtcctcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtccgaggtttaaaccccggcca 7206192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 11868728 - 11868655
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  11868728 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 11868655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 24592913 - 24592839
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggac-cggattcaaaccccggccac 85  Q
    |||||||||| ||||||||||| ||| || || ||| ||||||||||||||| |  || ||||||||||||||||    
T  24592913 gtcctcgtgaacttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccac 24592839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29544621 - 29544695
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||| |||||||||||||| | ||| || || ||| ||||||||||||||| || || ||||||||||||||||    
T  29544621 gtcctagtgagcttagctcaattggtagggacaatgcataatatatgcaaggtccggggttcaaaccccggccac 29544695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 34977198 - 34977272
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    ||||||||||||||| |||||| |||  | || ||| ||||||||||||||| ||||| || |||||||||||||    
T  34977198 gtcctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtccggagtttaaaccccggccac 34977272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 35360121 - 35360048
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  35360121 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 35360048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 35820368 - 35820294
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| ||| || || ||| |||||| |||||||| || || |||||||| |||||||    
T  35820368 gtcctcgtgagcttagctcagttggtagggacaatgcataatacatgcaaggtccggggttcaaacctcggccac 35820294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 7201501 - 7201550
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaa 61  Q
    |||||||||||||||||||||| |||  |||| ||| |||||||||||||    
T  7201501 gtcctcgtgagcttagctcagttggtttgaacaatgcataatatatgcaa 7201550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 20565139 - 20565086
Alignment:
Q  15 ctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    ||||||||||||||||||| ||| || || ||| ||||||||||||||| ||||    
T  20565139 ctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgg 20565086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 27244649 - 27244702
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| | | || || ||| |||||||||||||||    
T  27244649 atgtcctcgtgagcttagctcagttgatagggacaatgcataatatatgcaagg 27244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 346193 - 346117
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||||| |||  |||  ||| |||||||||| |||| || || ||||||||||| ||||    
T  346193 atgtcctcgtgagcttagctcagttggtttgaataatgcataatatatgtaaggtccagggttcaaaccccgaccac 346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 9581320 - 9581280
Alignment:
Q  45 atgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||||||||||| |||| ||||||||| ||||||    
T  9581320 atgaataatatatgcaaggtccgggttcaaaccctggccac 9581280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 17328073 - 17328017
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    |||||||||||||||||||||||||| || || ||| |||| ||| |||||| ||||    
T  17328073 gtcctcgtgagcttagctcagtcggttgggacaatgcataaaataagcaaggtccgg 17328017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 33063978 - 33064054
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||||||||| | |  | || ||| ||||||||||||||| ||||| ||| ||| ||||||||    
T  33063978 atgtcctcgtgagcttagctcagttgatatggacaatgcataatatatgcaaggtccggagttcgaactccggccac 33064054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 42045441 - 42045365
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||||||||| |||  | || ||| ||||||||||||||| | ||| ||||||||||||||||    
T  42045441 atgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggagttcaaaccccggccac 42045365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 37098548 - 37098497
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||| ||| || || |||||||||||||||||||    
T  37098548 gtcctcgtgagcttagctcagttggtagggacaatgaataatatatgcaagg 37098497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 21400095 - 21400039
Alignment:
Q  7 ataatgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||| |||||||||||||||||||||| ||| || || ||| |||||||||||||||    
T  21400095 ataaggtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 21400039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 37045214 - 37045162
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||| |||||||| ||| ||||| ||| |||||||||||||||    
T  37045214 tgtcctcgtgagctcagctcagttggtaggaacaatgcataatatatgcaagg 37045162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 41763224 - 41763148
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||||| ||| || |  ||| |||| |||||||||| || || ||||||||||||||||    
T  41763224 atgtcctcgtgagcttagctcagttggtagggataatgcataaaatatgcaaggtccggggttcaaaccccggccac 41763148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 48682000 - 48681949
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||| |||  |||| ||| |||||||||||||||    
T  48682000 gtcctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaagg 48681949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 3481551 - 3481629
Alignment:
Q  9 aatgtcctcgtgagcttagctcagtcggt-gggaaccatgaataatatatgcaaggac-cggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||||| ||| ||||   ||| ||||||||||||||| |  || ||||||||||||||||    
T  3481551 aatgtcctcgtgagcttagctcagttggtagggacaaatgcataatatatgcaaggtctggggttcaaaccccggccac 3481629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 17139584 - 17139510
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| ||| || || ||| ||||||||| ||||| || || ||||||||||| ||||    
T  17139584 gtcctcgtgagcttagctcagttggtagggacaatgcataatatattcaaggtccggggttcaaaccccgaccac 17139510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 16533097 - 16533028
Alignment:
Q  15 ctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggac-cggattcaaaccccggcc 83  Q
    |||||||| ||||||| || ||| ||||| ||| ||||||||||||||| |  |||||||||||||||||    
T  16533097 ctcgtgagtttagctcggttggtaggaacaatgcataatatatgcaaggtctaggattcaaaccccggcc 16533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 19795185 - 19795109
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatg-aataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||| |||||||||||||||| |||  ||||| || | |||||||||||||| || || ||||||||||||||||    
T  19795185 tgtccttgtgagcttagctcagttggtaagaaccttgcattaatatatgcaaggtccggggttcaaaccccggccac 19795109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 21341174 - 21341229
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtg--ggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| ||||  || || ||| |||||||||||||||    
T  21341174 atgtcctcgtgagcttagctcagttggtgtagggacaatgcataatatatgcaagg 21341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 30795694 - 30795746
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||| ||||||||||| |||  |||| ||| |||||||||||||||    
T  30795694 tgtcctcgtgaacttagctcagttggtaagaacaatgcataatatatgcaagg 30795746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 39452453 - 39452529
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaat-aatatatgcaaggac-cggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| |||  |||| ||| || || |||||||||| |  |||||||||||||||||||    
T  39452453 tgtcctcgtgagcttagctcagttggtatgaacaatgcataaaaatatgcaaggtctgggattcaaaccccggccac 39452529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 44243867 - 44243935
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaacccc 79  Q
    ||||||||||| |||||||||| ||| ||||| ||| |||||||||| |||| || || ||||||||||    
T  44243867 gtcctcgtgagtttagctcagttggtaggaacaatgcataatatatgtaaggtccagagttcaaacccc 44243935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 56777 - 56851
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| |||  | || ||| ||||||||||||||| || | |||||||||| |||||    
T  56777 tgtcctcgtgagcttagctcagttggtatggacaatgtataatatatgcaaggtccagtttcaaaccccagccac 56851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 50362208 - 50362155
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| ||| || || ||| |||||||||||||||    
T  50362208 atgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagg 50362155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 20799461 - 20799405
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    |||||||||||||||||||||| ||| || || ||| ||||||||||||||| ||||    
T  20799461 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgg 20799405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 7230273 - 7230348
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| |||  | || ||| ||||||||||||||| || || |||||||| |||||||    
T  7230273 tgtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaacctcggccac 7230348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 52270101 - 52270046
Alignment:
Q  8 taatgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  52270101 taatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 52270046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 10261835 - 10261762
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  10261835 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 10261762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 21562620 - 21562693
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  21562620 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 21562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 26926776 - 26926703
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  26926776 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 26926703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 35287574 - 35287500
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||||||||| |||  |||| ||| |||| |||||||||| || || ||| ||||||||||||    
T  35287574 gtcctcgtgagcttagctcagttggtatgaacaatgcataaaatatgcaaggtccggggttccaaccccggccac 35287500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 43330141 - 43330214
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  43330141 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 43330214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 51450207 - 51450280
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  51450207 gtcctcgtgagcttagcttagttggtagg-acaatgcataagatatgcaaggtccggagttcaaaccccggccac 51450280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 2186402 - 2186349
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  2186402 atgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 2186349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 14577574 - 14577501
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggcca 84  Q
    ||||||||||| |||||||||| |||  | || ||| ||||||||||||| | ||||| |||||||||||||||    
T  14577574 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagttcaaaccccggcca 14577501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 23304084 - 23304027
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    ||||||||||||||||||||||| ||| || || | | ||||||||||||||| ||||    
T  23304084 tgtcctcgtgagcttagctcagttggtagggacaaggcataatatatgcaaggtccgg 23304027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 2888866 - 2888942
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggt-gggaaccatgaataatatatgcaaggaccg-gattcaaaccccggccac 85  Q
    |||||| |||||||||||||||| ||| ||||   ||| ||||||||||||||| ||| | ||||||||||||||||    
T  2888866 tgtccttgtgagcttagctcagttggtagggacaaatgtataatatatgcaaggtccgcggttcaaaccccggccac 2888942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 3648933 - 3648897
Alignment:
Q  49 ataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  3648933 ataatatatgcaaggtccggattcaaatcccggccac 3648897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 3936627 - 3936695
Alignment:
Q  18 gtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    |||||||||||||||| |||  |||| ||| ||||||||||||||| || || ||| ||||||||||||    
T  3936627 gtgagcttagctcagttggtatgaacaatgcataatatatgcaaggtccggggttcgaaccccggccac 3936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 21449966 - 21449914
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||||   ||||| ||| || ||||||||||||    
T  21449966 tgtcctcgtgagcttagctcagtcgacaggaacaatgcatgatatatgcaagg 21449914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 56204978 - 56205014
Alignment:
Q  49 ataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  56204978 ataatatatgcaaggtccggattcaaacctcggccac 56205014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 3953436 - 3953500
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaacc 77  Q
    |||||||||||||||||||||||||  | || ||| |||||||||||||||  ||| ||||||||    
T  3953436 tcctcgtgagcttagctcagtcggtatggacaatgcataatatatgcaaggttcgggttcaaacc 3953500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 10326949 - 10327021
Alignment:
Q  13 tcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||| | ||||||||||| |||| |||| ||| ||||||||||||||| || | |||||||| |||||||    
T  10326949 tcctcgtaaacttagctcagttggtgtgaacaatgcataatatatgcaaggtccaggttcaaacctcggccac 10327021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 19416507 - 19416582
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||| |||  | || ||| |||| |||||||||| || || ||||||||||||||||    
T  19416507 tgtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttcaaaccccggccac 19416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 27462504 - 27462429
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||| ||||||||| |||  | || ||| ||||||||||||||| || || ||||||||||||||||    
T  27462504 tgtcctcgtgagcatagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccggccac 27462429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 46207754 - 46207821
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaacccc 79  Q
    |||||||||||||||||||||| |||  |||| ||| |||| |||||||| | |||| ||||||||||    
T  46207754 gtcctcgtgagcttagctcagttggtatgaacaatgcataaaatatgcaatgtccgggttcaaacccc 46207821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 3671822 - 3671892
Alignment:
Q  16 tcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||| |||||||||||||||  |||| ||| ||||||||||||||| | ||| ||||||||||| ||||    
T  3671822 tcgtgatcttagctcagtcggtatgaacaatgcataatatatgcaaggtctggagttcaaaccccgaccac 3671892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 7670426 - 7670484
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    ||||| |||||||||||||||||| |||  |||| ||| ||||||||||||||| ||||    
T  7670426 atgtcttcgtgagcttagctcagttggtttgaacaatgcataatatatgcaaggtccgg 7670484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 20763149 - 20763222
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  20763149 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 20763222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 29488715 - 29488788
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  29488715 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 29488788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 33232463 - 33232390
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  33232463 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 33232390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 34284605 - 34284532
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  34284605 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 34284532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 18505721 - 18505656
Alignment:
Q  15 ctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccg 80  Q
    ||||||||||||||||||| ||| || || ||| |||| |||||||||  |||| |||||||||||    
T  18505721 ctcgtgagcttagctcagttggtagggacaatgcataaaatatgcaagatccgggttcaaaccccg 18505656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 7388108 - 7388032
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg-accggattcaaaccccggccac 85  Q
    ||||||||||||||||| |||||| ||| || || ||| |||||||||| ||||  | |||||||||||||| ||||    
T  7388108 atgtcctcgtgagcttaactcagttggttgggacaatgcataatatatgtaaggttcgggattcaaaccccgaccac 7388032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 10244721 - 10244777
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    |||||||||||||||||||||| |||  | || ||| ||||||||||||||| ||||    
T  10244721 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtccgg 10244777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 19626594 - 19626518
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||| |||||| |||  | || ||| ||||||||||||||| || || ||||||| ||||||||    
T  19626594 atgtcctcgtgagcttaactcagttggtttggacaatgcataatatatgcaaggtccggggttcaaacaccggccac 19626518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 20576480 - 20576404
Alignment:
Q  9 aatgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggac-cggattcaaaccccggcca 84  Q
    ||||||||||||||||||||||||  ||| || || ||| |||| |||||||||| |  |||||||||||| |||||    
T  20576480 aatgtcctcgtgagcttagctcagctggttgggacaatgtataaaatatgcaaggtctgggattcaaaccctggcca 20576404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 21993176 - 21993248
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggcca 84  Q
    ||||||||||||||| |||||| |||  | || ||| |||| |||||||||| | || |||||||||||||||    
T  21993176 gtcctcgtgagcttaactcagttggtatggacaatgcataaaatatgcaaggccgggtttcaaaccccggcca 21993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 22600424 - 22600476
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| ||  |||  ||| |||||||||||||||    
T  22600424 tgtcctcgtgagcttagctcagtcagtttgaataatgcataatatatgcaagg 22600476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 46737777 - 46737853
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggacc-ggattcaaaccccggccac 85  Q
    ||||||||||||||||||||||||  ||  | || ||| ||||||||||||||| || || ||||||| ||||||||    
T  46737777 atgtcctcgtgagcttagctcagtttgtttggacaatgcataatatatgcaaggtccggggttcaaacaccggccac 46737853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 21296750 - 21296825
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccggattcaaaccccggccac 85  Q
    ||||||||||||| |||||||||| ||| || || ||| |||| |||||||||| || | |||||| |||||||||    
T  21296750 atgtcctcgtgagtttagctcagttggttgggacaatgcataaaatatgcaaggtccaggttcaaatcccggccac 21296825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 32053778 - 32053833
Alignment:
Q  8 taatgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||||| |||  | || ||| |||||||||||||||    
T  32053778 taatgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaagg 32053833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 247654 - 247727
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggccac 85  Q
    |||||||||||||||||| ||| ||| || || ||| |||| |||||||||| ||||| ||||||||||||||||    
T  247654 gtcctcgtgagcttagcttagttggtagg-acaatgcataaaatatgcaaggtccggagttcaaaccccggccac 247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 1514230 - 1514176
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagga 64  Q
    |||||||||||||||||||||||| |||  | || ||| ||||||||||||||||    
T  1514230 atgtcctcgtgagcttagctcagttggttaggacaatgtataatatatgcaagga 1514176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 10780176 - 10780122
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagga 64  Q
    |||| ||||||||||||||||||| ||| || || ||| ||||||||||||||||    
T  10780176 atgtgctcgtgagcttagctcagttggtagggacaatgcataatatatgcaagga 10780122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 13496105 - 13496179
Alignment:
Q  7 ataatgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccg 80  Q
    |||| ||||||||||||||| |||||| | |  |||| ||| ||||||||||||||| ||||| |||||||||||    
T  13496105 ataaagtcctcgtgagcttaactcagttgatatgaacaatgcataatatatgcaaggtccggagttcaaaccccg 13496179  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 9111040 - 9111097
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgg 68  Q
    ||||||||||||||||| ||||| |||  |||| ||| ||||||||||||||| ||||    
T  9111040 tgtcctcgtgagcttagttcagttggtatgaacaatgcataatatatgcaaggtccgg 9111097  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 9444949 - 9445002
Alignment:
Q  10 atgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||||||||||||||| |||  |||| ||| |||| ||||||||||    
T  9444949 atgtcctcgtgagcttagctcagttggtatgaacaatgtataaaatatgcaagg 9445002  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 866353 - 866301
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    |||||||||||| |||||||||| ||| || || ||| |||||||||||||||    
T  866353 tgtcctcgtgagtttagctcagttggtaggcacgatgcataatatatgcaagg 866301  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 33938743 - 33938695
Alignment:
Q  15 ctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||||||||||| |||  |||| ||| |||||||||||||||    
T  33938743 ctcgtgagcttagctcagttggtatgaacaatgcataatatatgcaagg 33938695  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 34701140 - 34701192
Alignment:
Q  11 tgtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaagg 63  Q
    ||||||||||| ||||| ||||| ||| ||||| ||| |||||||||||||||    
T  34701140 tgtcctcgtgaacttagttcagttggtaggaacaatgcataatatatgcaagg 34701192  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 239801 - 239874
Alignment:
Q  12 gtcctcgtgagcttagctcagtcggtgggaaccatgaataatatatgcaaggaccgga-ttcaaaccccggcca 84  Q
    ||||||||||| |||||||||| |||  | || ||| ||||||||||||| | ||||| |||||||||||||||    
T  239801 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaaagtccggagttcaaaccccggcca 239874  T

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