View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701-Insertion-10 (Length: 639)
Name: NF1701-Insertion-10
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701-Insertion-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 4093316 - 4093947
Alignment:
| Q |
8 |
gtaagcaggagacaagcttacaaccatataaataaaacataaagtgttcatagatttgcacataagagtgaaaacaacatattctttgaagtctcaacca |
107 |
Q |
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| T |
4093316 |
gtaagcaggagacaagcttacaagcatataaataaaacataaagtgttcatagatttgcacataaaagtgaaaataacatattctttgaagtctcaacca |
4093415 |
T |
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| Q |
108 |
tagacgggtatttgaaaatcgtttgaaactcaaacaacgacaaacattgccttctgaaagtagaaggactatcatctttctctattcatggatgagatga |
207 |
Q |
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| T |
4093416 |
tagactggtatttgaaaatcgtttgaaactcaaacaacgacaaacactgccttctgaaagtagaaggacgatcatctttctctattcatggatgagatga |
4093515 |
T |
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| Q |
208 |
tgacttgattggtgttggttcgacaaaaacaatgggaaacgaattcatatttgtttttccttgtttttgttgaatcgacaattatcagatcatcgcctcc |
307 |
Q |
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| T |
4093516 |
tgacttgattggtgttggttcgacaaaaacaatgggaaacgaattcatatttgtttttccttgtttttgttgaatcgacaattatcaggtcatcgtctca |
4093615 |
T |
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| Q |
308 |
gtcgtaagaataaggaggaggattgtgaacatgtacatctcaggagcgtcatcgatgattgtcgttagagcttcaagtgatttttaagtaccggtccatt |
407 |
Q |
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| T |
4093616 |
gtcgtaagaataaggaggaggaccgtgaacatctacatctcaggagcgtcatcgatgattgtcgttagagtttcaagtgatttttaagtaccgatccatt |
4093715 |
T |
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| Q |
408 |
gtggtccatagtagaacccgcctattagtagttgatattcactttacaagaagtacctttgccttggacagttggaggtgaaactaaatctttaatgtta |
507 |
Q |
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| T |
4093716 |
gtggtccatagtagaacccgcctattagtagttgatagtcactttacaagaagtacatttgccttggacagttggaggtgaaactaaatctttaatgtta |
4093815 |
T |
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| Q |
508 |
tcaacaaatagtgtttatgttactaagtggtattcactattcattttatggcaatgagcattatgtagaaccaaagttgagaaaggaataagaacacaac |
607 |
Q |
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| T |
4093816 |
tcaacaaatagtgtttatgttactaagtggtattcactattcattttatggcaatgagcattatgtagaaccaaagttgagaaaggaataagaacacaac |
4093915 |
T |
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| Q |
608 |
acctcagtatcaaggttagaggctgaaaatga |
639 |
Q |
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| T |
4093916 |
acctcagtatcaaggttagaggttgaaaatga |
4093947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 12631003 - 12630935
Alignment:
| Q |
104 |
accatagacgggtatttgaaaatcgtttgaaactcaaacaacgacaaacattgccttctgaaagtagaag |
173 |
Q |
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| T |
12631003 |
accatagactggtacttgaaaattgttctaaactcaa-caatgacagacattgccttctggaagtagaag |
12630935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 40941071 - 40941103
Alignment:
| Q |
115 |
gtatttgaaaatcgtttgaaactcaaacaacga |
147 |
Q |
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| T |
40941071 |
gtatttgaaaatcgtttgaaactccaacaacga |
40941103 |
T |
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