View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701-Insertion-12 (Length: 677)

Name: NF1701-Insertion-12
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701-Insertion-12
NF1701-Insertion-12
[»] chr7 (2 HSPs)
chr7 (8-677)||(2237242-2237898)
chr7 (109-209)||(2261068-2261168)


Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 8 - 677
Target Start/End: Original strand, 2237242 - 2237898
Alignment:
Q  8 ttacatgtgtagttaacatcatcggcgcctctccaaaatctgcatctggtatagaaccttgtggtggacaattagaaattgaagcattgttacatgaaac 107  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2237242 ttacatgtgtagttaacatcattggtgcctctccaaaatctgcatctggtatagaaccttgaggtggacaattagaaattgaagcattgttacatgaaac 2237341  T
Q  108 aaaccatacatcatatcctcctaattgtttgtaccattcgatattaccactgtccaaatcaagggccaagattgaattggaatgattttctggttcaaca 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  2237342 aaaccatacatcatatcctcctaattgtttgtaccatttgatattaccactgtccaaatcaagggccaagattgaatttgagtgattttctggttcaaca 2237441  T
Q  208 cacttgtcttgttcaataggagtagtttgattattttgtctttcttgacattcaagtacgttttttggagcagagtrgagatttccggtggcaatataga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  2237442 cacttgtcttgttcaataggagtagtttgattattttgtctttcttgacattcaagtacgttttttggggcagagtagagatttccggtggcaatataga 2237541  T
Q  308 catgttttcgataaacatcaatggaaggactgcttccccaaatggcagctccagcgtatgctcctatctttccgttgttatccggtaacatatgggtttt 407  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  2237542 catgttttcgataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctttccgttgttatccggtaacatataggtttt 2237641  T
Q  408 ccataagatatcgccggtttgagcatcaagttttacaaggcttccacggaatatgcaacaatctttaatggtcgcaccttcttcaagtgaagatgttcca 507  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  2237642 ccataagatgtcgccggtttgagcatcaagttttacaagacttccacgaaatatgcaacaatctttaatggttgcaccttcttctagtgaagatgttcca 2237741  T
Q  508 acgtagtaactcttatattttgagagtttagcacaattatacgtcgatataaaagggtcaaaaagtaaaaaggaatgagtgataatccaaaacttgaann 607  Q
    || ||||||||| ||||| |||| ||||||||| |||||||| | |||||||| ||||| ||||| || ||||||||| |||||  || ||||||||       
T  2237742 acatagtaactcctatatattgaaagtttagcataattatactttgatataaacgggtcgaaaagaaagaaggaatgaatgatagccccaaacttga--- 2237838  T
Q  608 nnnnnaaggaagtcctcatacttgtttggtgacgttagagaaattctttcaatgttttatgatactccaa 677  Q
              ||||| |||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||    
T  2237839 ---------tagtccccatacttgattggtgaggttagataaa-tctttcaatgttttatgatactccaa 2237898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 2261168 - 2261068
Alignment:
Q  109 aaccatacatcatatcctcctaattgtttgtaccattcgatattaccactgtccaaatcaagggccaagattgaattggaatgattttctggttcaacac 208  Q
    ||||| ||||||||||| |||||||| | ||||||||  || | |||| ||| ||||||||| || ||||||||||| ||||||||||||||||||||||    
T  2261168 aaccaaacatcatatccacctaattgatggtaccatttaatttcaccattgtacaaatcaagtgctaagattgaattagaatgattttctggttcaacac 2261069  T
Q  209 a 209  Q
    |    
T  2261068 a 2261068  T

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