View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701-Insertion-14 (Length: 508)

Name: NF1701-Insertion-14
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701-Insertion-14
NF1701-Insertion-14
[»] chr4 (5 HSPs)
chr4 (7-508)||(22495685-22496179)
chr4 (341-508)||(13609265-13609432)
chr4 (354-415)||(13157063-13157124)
chr4 (130-179)||(43388070-43388119)
chr4 (136-172)||(28880512-28880548)
[»] chr7 (3 HSPs)
chr7 (341-508)||(9627814-9627981)
chr7 (353-506)||(35515755-35515908)
chr7 (353-490)||(24905403-24905540)
[»] chr3 (3 HSPs)
chr3 (341-508)||(48340574-48340741)
chr3 (353-506)||(23049741-23049894)
chr3 (348-403)||(25408389-25408444)
[»] chr5 (3 HSPs)
chr5 (341-478)||(22936570-22936706)
chr5 (138-179)||(25410596-25410637)
chr5 (138-179)||(20319328-20319369)
[»] chr1 (4 HSPs)
chr1 (346-504)||(17128103-17128261)
chr1 (354-490)||(42785460-42785596)
chr1 (136-179)||(43356590-43356633)
chr1 (390-506)||(42475978-42476094)
[»] chr6 (1 HSPs)
chr6 (354-487)||(18672991-18673124)
[»] chr2 (1 HSPs)
chr2 (453-506)||(12606587-12606640)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 508
Target Start/End: Complemental strand, 22496179 - 22495685
Alignment:
Q  7 acatacaccataattttcacgatacaacaaacaggaaatcatttggtgcttactttaatttattttggtccaaacattatctcttgaacattcaagaggc 106  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||      
T  22496179 acatactccataattttcacgacacaacaaacaggaaatcatttggtgcttactt-aatttattttggtccaaacattatctcttgaacattcaagag-- 22496083  T
Q  107 aacccacggttgttagcggaagctgaatatatgtaatggttctattcaattggaattgaaatgcaaataatatatattgatgtttcctcnnnnnnnnnnn 206  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||               
T  22496082 ----------------cggaagctgaatatatgtaatggttctattcaattggaattgaaatgcaaataatatctattgatgtttcctcaaaaaaaaaaa 22495999  T
Q  207 nnn---ctattgattcacctaaagaaacattacaagttcacaatttggtaaattcaatctttgttgatagataaaaataggtaaataagaattgcagtaa 303  Q
          |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22495998 aaaattctattgattcacctaaagaaacattacaagtttacaatttggtaaattcaatctttgttgatagataacaataggtaaataagaattgcagtaa 22495899  T
Q  304 caataagaatataaag---------ggactaaagaatcagcaatcccaagaacgttcttttgaaggtggtgatttttgcttggcgtctggttcgtgatag 394  Q
    ||||||||||| ||||         |||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  22495898 caataagaatacaaagaatcgaaagggactaaagaatcaacgatcccaagaatgtttttttgaaggtggtgatttttgcttggcgtctggttcgtgatag 22495799  T
Q  395 gctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagccttgcgttggagattgtggggagatggaaacatcttctcatctg 494  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  22495798 gctacctaccaaggataacctcttctgtcgacatgtcattggcattgatgcgcaaccttgcgttggagaatgtggggagatggaaacatcttctcatcta 22495699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 341 - 508
Target Start/End: Complemental strand, 13609432 - 13609265
Alignment:
Q  341 caagaacgttcttttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcatt 440  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  13609432 caagaacgttcctttgaaggtggtaatttttgcttggcgtctgtttcgtgataggctacctaccaaggataacctcttccgtcgacatgtcattggaatt 13609333  T
Q  441 gatgcgcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgtga 508  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13609332 gatgctcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgtga 13609265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 13157063 - 13157124
Alignment:
Q  354 ttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacct 415  Q
    |||||||||||| | ||||| ||||||||| |||| ||| |||| ||| |||||||||||||    
T  13157063 ttgaaggtggtgttgtttgcgtggcgtctgtttcgcgatcggcttccttccaaggataacct 13157124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 43388119 - 43388070
Alignment:
Q  130 tgaatatatgtaatggttctattcaattggaattgaaatgcaaataatat 179  Q
    ||||||| ||||||||||||  ||||||||||| |||||||||| |||||    
T  43388119 tgaatatctgtaatggttctcctcaattggaatggaaatgcaaacaatat 43388070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 28880548 - 28880512
Alignment:
Q  136 tatgtaatggttctattcaattggaattgaaatgcaa 172  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  28880548 tatgtaatggttctactcaattggaatggaaatgcaa 28880512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 341 - 508
Target Start/End: Original strand, 9627814 - 9627981
Alignment:
Q  341 caagaacgttcttttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcatt 440  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  9627814 caagaacgttcctttgaaggtggtaatttttgcttggcgtctgtttcgtgataggctacctaccaaggataacctcttccgtcgacatgtcattggaatt 9627913  T
Q  441 gatgcgcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgtga 508  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9627914 gatgctcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgtga 9627981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 506
Target Start/End: Original strand, 35515755 - 35515908
Alignment:
Q  353 tttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagcct 452  Q
    ||||||||||||| | |||| ||||||  || |||| |||||||| ||||| ||||| || |||| |||||  || || |||| ||| || || ||| ||    
T  35515755 tttgaaggtggtgctatttgtttggcgcttgtttcgggataggcttcctactaaggacaatctataccgtcatcaggttattgacatcgaagctcagtct 35515854  T
Q  453 tgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgt 506  Q
    || ||||||| |||||||||| |||||||||||||||| || ||||||||||||    
T  35515855 tgtgttggaggttgtggggaggtggaaacatcttctcacctttttttacattgt 35515908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 490
Target Start/End: Complemental strand, 24905540 - 24905403
Alignment:
Q  353 tttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagcct 452  Q
    ||||||||||||| | |||| |||||||||| | | ||||||| | ||||| ||||| ||| | | |||||| |||||  ||||||||||||  ||   |    
T  24905540 tttgaaggtggtgttatttgtttggcgtctgttacatgataggttgcctactaaggacaacatttaccgtcgtcatgtggttggcattgatgatcaattt 24905441  T
Q  453 tgcgttggagattgtggggagatggaaacatcttctca 490  Q
    ||||| |||| |||||||||| ||||||||||||||||    
T  24905440 tgcgtgggaggttgtggggaggtggaaacatcttctca 24905403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 341 - 508
Target Start/End: Complemental strand, 48340741 - 48340574
Alignment:
Q  341 caagaacgttcttttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcatt 440  Q
    ||||||||||  ||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  48340741 caagaacgtttctttgaaggtggtgatttttgcctcgcgtctgtttcgtgataggctaccaaccaaggataacctcttccgtcgacatgtcattggcatt 48340642  T
Q  441 gatgcgcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgtga 508  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48340641 gatgctcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgtga 48340574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 506
Target Start/End: Original strand, 23049741 - 23049894
Alignment:
Q  353 tttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagcct 452  Q
    ||||||||||||| | ||||||||| || || |||| |||||||| ||||| ||||| || ||||   |||| ||||| |||| ||| || || ||| ||    
T  23049741 tttgaaggtggtgttatttgcttggagtttgtttcgggataggcttcctactaaggagaatctatattgtcgtcatgttattgacatcgaagctcagtct 23049840  T
Q  453 tgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgt 506  Q
    || |||||||  ||||||||| |||||| ||||||||| || ||||||||||||    
T  23049841 tgtgttggagcctgtggggaggtggaaatatcttctcacctttttttacattgt 23049894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 25408389 - 25408444
Alignment:
Q  348 gttcttttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctac 403  Q
    |||| ||||||||| ||  | ||||||||||||||| |||||||||||||||||||    
T  25408389 gttcctttgaaggttgtattgtttgcttggcgtctgtttcgtgataggctacctac 25408444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 341 - 478
Target Start/End: Original strand, 22936570 - 22936706
Alignment:
Q  341 caagaacgttcttttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcatt 440  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  22936570 caagaacgttcctttgaaggtggtgatttttgcctggcgtctgtttcatgataggctacctaccaaggataacctcttccttcgacatgtcattggcatt 22936669  T
Q  441 gatgcgcagccttgcgttggagattgtggggagatgga 478  Q
     |||| | |||||||||||||||||||| |||||||||    
T  22936670 -atgctctgccttgcgttggagattgtgtggagatgga 22936706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 25410596 - 25410637
Alignment:
Q  138 tgtaatggttctattcaattggaattgaaatgcaaataatat 179  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  25410596 tgtaatggctctactcaattggaattgaaatgcaaataatat 25410637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 20319328 - 20319369
Alignment:
Q  138 tgtaatggttctattcaattggaattgaaatgcaaataatat 179  Q
    |||||||||| |||||||||||||| |||||||||| |||||    
T  20319328 tgtaatggttgtattcaattggaatggaaatgcaaacaatat 20319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 346 - 504
Target Start/End: Original strand, 17128103 - 17128261
Alignment:
Q  346 acgttcttttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgc 445  Q
    |||||| ||||||||||||| | |||||  | |||||| ||||||||||||| ||| ||||||||||||| | |||| |||| || |||||||||||| |    
T  17128103 acgttcctttgaaggtggtgttatttgcccgacgtctgtttcgtgataggcttcctgccaaggataacctttcccgttgacaagttattggcattgatac 17128202  T
Q  446 gcagccttgcgttggagattgtggggagatggaaacatcttctcatctgtttttacatt 504  Q
     ||   |||| |||||||||||||||| |||||||||||||||||  |||| |||||||    
T  17128203 acaagattgcattggagattgtggggaaatggaaacatcttctcacttgttattacatt 17128261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 490
Target Start/End: Original strand, 42785460 - 42785596
Alignment:
Q  354 ttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagcctt 453  Q
    ||||||||| || | ||||||||||| ||| | ||||||||| | | ||| ||||| ||||| | ||| ||  ||||  ||||  ||||||  ||||  |    
T  42785460 ttgaaggtgatgttatttgcttggcgcctgttacgtgataggttgcgtactaaggacaacctttaccgacgtaatgtggttggtgttgatgatcagctgt 42785559  T
Q  454 gcgttggagattgtggggagatggaaacatcttctca 490  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  42785560 gcgttggaggttgtggggaggtggaaacatcttctca 42785596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 43356590 - 43356633
Alignment:
Q  136 tatgtaatggttctattcaattggaattgaaatgcaaataatat 179  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||    
T  43356590 tatgtaatggttctactcaattggaatggaaatgcaaacaatat 43356633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 506
Target Start/End: Original strand, 42475978 - 42476094
Alignment:
Q  390 gataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagccttgcgttggagattgtggggagatggaaacatcttctc 489  Q
    |||||||||||||| || ||||| || || ||||||| |||||||    ||||||| |||   ||| ||||||  || |||||| |||||||||||||||    
T  42475978 gataggctacctacgaaagataatctttttcgtcgacgtgtcattaattttgatgctcagttgtgcattggagggtgcggggaggtggaaacatcttctc 42476077  T
Q  490 atctgtttttacattgt 506  Q
    | || ||||| ||||||    
T  42476078 accttttttttcattgt 42476094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 487
Target Start/End: Original strand, 18672991 - 18673124
Alignment:
Q  354 ttgaaggtggtgatttttgcttggcgtctggttcgtgataggctacctaccaaggataacctattccgtcgacatgtcattggcattgatgcgcagcctt 453  Q
    |||||||||||  | ||||||||| ||||| | ||| | ||||| ||||| || || ||||||| ||||||||| || ||||  |||||||| |||   |    
T  18672991 ttgaaggtggttttatttgcttggtgtctgttccgtaacaggctccctactaaagacaacctataccgtcgacaagtaattgatattgatgctcagttgt 18673090  T
Q  454 gcgttggagattgtggggagatggaaacatcttc 487  Q
    | ||||| |  ||||||||| |||||||||||||    
T  18673091 gtgttggcggatgtggggaggtggaaacatcttc 18673124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 12606587 - 12606640
Alignment:
Q  453 tgcgttggagattgtggggagatggaaacatcttctcatctgtttttacattgt 506  Q
    |||||||||| |||||||||| ||||||||||| ||||| | || |||||||||    
T  12606587 tgcgttggaggttgtggggaggtggaaacatctgctcatttattattacattgt 12606640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University