View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701-Insertion-15 (Length: 896)
Name: NF1701-Insertion-15
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 834; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 834; E-Value: 0
Query Start/End: Original strand, 8 - 896
Target Start/End: Complemental strand, 27027934 - 27027046
Alignment:
| Q |
8 |
attacactatcttgctttgatgcgaaatgcttaaatgatgatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaata |
107 |
Q |
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| T |
27027934 |
attacactatcttgctttgatgcgaaatgcttaaatgatgatattccgattcatttttatgtatgaagtgaattctaatgaaaactttctggtgtcaata |
27027835 |
T |
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| Q |
108 |
tacagaacttagcagcatccatagataatgtgggactacatgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatgg |
207 |
Q |
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| T |
27027834 |
tacagaacttagcagcatccatagataatgtgggactacatgatttatttcaaaaatatgggaacattttgtccagcaaaattgccaggtctgaggatgg |
27027735 |
T |
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| Q |
208 |
gaagagcaaagggtttggttatatccagtttgattcagaggagtctgcaaatgtggctatccagaaaatgaatggctctactgtgagagataagcagatg |
307 |
Q |
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| T |
27027734 |
gaagagcaaagggtttggttatatccagtttgattcagaggagtctgcaaatgtggctatccagaaaatgaatggctctactgtgagagataagcagatg |
27027635 |
T |
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| Q |
308 |
tatgtgaaattattttagcgcttgttaaaatttgccgtcattgatatccatatatgttgtgatttgaagtctatgnnnnnnnnngccttcagttaattgc |
407 |
Q |
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| T |
27027634 |
tatgtgaaattattttagcgcttgttaaaatttgccgtcattgatatccatatatgttgtgatttgaagtctatgtttttttt-gccttcagttaattgc |
27027536 |
T |
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| Q |
408 |
tgtttttgttatcctaagattggttttaatctgattccaattcttctcacagatatgttgggaaatttatcagaaaaagtgagcgctctcttcctgacct |
507 |
Q |
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| T |
27027535 |
tgtttttgttatcctaagattggttttaatctgattccaattcttctcacagatatgttgggaaatttatcagaaaaagtgagcgctctcttcctgacct |
27027436 |
T |
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| Q |
508 |
ggatgccaaatttacaaacttgtacgttaagaatttggacccagttgttactgaaaagcatcttggagaaaagttctcctcttttgggaaaatttttagc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
27027435 |
ggatgccaaatttacaaacttgtacgttaagaatttggacccagttgttactgaaaagcatcttggagaaaagttctcctcttttggaaaaattgttagc |
27027336 |
T |
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| Q |
608 |
ttggctattaaaaaggatgagaatgggcagtcaaaaggcttcggatttgttaactatgacagcccagatgatgctagacgagcaatggaagcaatggatg |
707 |
Q |
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| T |
27027335 |
ttggctattaaaaaggatgagaatgggcagtcaaaaggcttcggatttgttaactatgacagcccagatgatgctagacgagcaatggaagcaatggatg |
27027236 |
T |
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| Q |
708 |
gatcacagtttggtaatttatttaactttttagcatatagatattttctgcacaaaattgcactttcctggatgttgattctctgcttaaatctggtttt |
807 |
Q |
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| T |
27027235 |
gatcacagtttggtaatttatttaactttttagcatatagatattttctgcacaaaattgcactttccaggatgttgattctctgcttaaatctggtttt |
27027136 |
T |
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| Q |
808 |
gatttgtcataagtaggttcaaagatcttgtatgttgcaagagcacaa-aaaaggttgaacgtgagcagatattgcaccatttgtttgtg |
896 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
27027135 |
gatttgtcataagtaggttcaaagatcttgtatgttgcaagagcacaaaaaaaggttgaacgtgagcagatattgcatcatttgtttgtg |
27027046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 17000046 - 17000004
Alignment:
| Q |
416 |
ttatcctaagattggttttaatctgattccaattcttctcaca |
458 |
Q |
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| T |
17000046 |
ttatcctaagattcgttttaatctaattccaattcttctcaca |
17000004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 789
Target Start/End: Complemental strand, 16999882 - 16999844
Alignment:
| Q |
751 |
ttttctgcacaaaattgcactttcctggatgttgattct |
789 |
Q |
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|||| |||||||||||| ||||||||||||||||||||| |
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| T |
16999882 |
ttttgtgcacaaaattgtactttcctggatgttgattct |
16999844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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