View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701-Insertion-16 (Length: 897)

Name: NF1701-Insertion-16
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701-Insertion-16
NF1701-Insertion-16
[»] chr1 (24 HSPs)
chr1 (379-862)||(11614168-11614658)
chr1 (11-163)||(11613886-11614038)
chr1 (304-380)||(34437583-34437659)
chr1 (305-378)||(38663730-38663803)
chr1 (305-362)||(40669008-40669065)
chr1 (305-365)||(2542702-2542762)
chr1 (305-361)||(45563145-45563201)
chr1 (318-365)||(34437689-34437736)
chr1 (318-365)||(49822620-49822667)
chr1 (319-356)||(31851952-31851989)
chr1 (322-365)||(38948188-38948231)
chr1 (305-356)||(49403551-49403602)
chr1 (319-365)||(31970120-31970166)
chr1 (305-379)||(45215406-45215480)
chr1 (318-374)||(40668922-40668976)
chr1 (305-365)||(7444360-7444420)
chr1 (317-365)||(16661815-16661863)
chr1 (351-387)||(25080116-25080152)
chr1 (256-295)||(11614137-11614176)
chr1 (304-374)||(2542780-2542850)
chr1 (304-362)||(11105951-11106009)
chr1 (319-365)||(38663651-38663697)
chr1 (322-363)||(34783443-34783484)
chr1 (317-374)||(35752133-35752190)
[»] chr2 (31 HSPs)
chr2 (305-380)||(42251242-42251317)
chr2 (305-374)||(16209366-16209435)
chr2 (305-378)||(33171678-33171751)
chr2 (305-375)||(25666788-25666858)
chr2 (321-380)||(23001415-23001474)
chr2 (305-379)||(3466374-3466447)
chr2 (322-374)||(42029333-42029385)
chr2 (305-365)||(42029421-42029481)
chr2 (318-365)||(42094294-42094341)
chr2 (304-362)||(18719734-18719792)
chr2 (305-358)||(37810153-37810206)
chr2 (305-374)||(44247529-44247598)
chr2 (307-363)||(33069169-33069225)
chr2 (305-365)||(41496059-41496119)
chr2 (315-378)||(29160828-29160891)
chr2 (305-352)||(44247617-44247664)
chr2 (304-365)||(12703472-12703533)
chr2 (305-378)||(42094196-42094263)
chr2 (305-374)||(42251154-42251223)
chr2 (305-365)||(1469739-1469799)
chr2 (317-365)||(9430228-9430276)
chr2 (305-365)||(12779502-12779561)
chr2 (318-362)||(45300459-45300503)
chr2 (320-371)||(21309695-21309746)
chr2 (318-365)||(25666890-25666937)
chr2 (319-362)||(35715066-35715109)
chr2 (319-365)||(1930670-1930716)
chr2 (319-361)||(8090937-8090979)
chr2 (305-374)||(37810225-37810292)
chr2 (304-365)||(2683454-2683515)
chr2 (304-365)||(3466465-3466526)
[»] chr3 (22 HSPs)
chr3 (304-378)||(11532513-11532587)
chr3 (305-378)||(40554117-40554190)
chr3 (304-365)||(3901571-3901632)
chr3 (304-379)||(3901485-3901560)
chr3 (305-375)||(29955117-29955187)
chr3 (305-375)||(30004271-30004341)
chr3 (319-379)||(799334-799394)
chr3 (304-362)||(40763446-40763504)
chr3 (305-370)||(19560708-19560773)
chr3 (321-374)||(46555587-46555640)
chr3 (305-365)||(14345151-14345211)
chr3 (305-365)||(36480707-36480767)
chr3 (305-356)||(35357326-35357377)
chr3 (318-363)||(799147-799192)
chr3 (307-352)||(31205450-31205495)
chr3 (304-365)||(36480785-36480846)
chr3 (305-375)||(32881076-32881146)
chr3 (302-356)||(37189220-37189274)
chr3 (319-375)||(3300715-3300769)
chr3 (320-377)||(11532423-11532480)
chr3 (319-372)||(44890430-44890483)
chr3 (325-374)||(45404125-45404174)
[»] chr7 (27 HSPs)
chr7 (319-380)||(7017179-7017240)
chr7 (319-380)||(7032537-7032598)
chr7 (306-387)||(36992903-36992984)
chr7 (304-380)||(11201278-11201354)
chr7 (318-365)||(2276277-2276324)
chr7 (319-365)||(49106998-49107044)
chr7 (305-365)||(3235559-3235619)
chr7 (318-377)||(10056611-10056670)
chr7 (318-374)||(3235651-3235705)
chr7 (304-365)||(12275816-12275877)
chr7 (308-380)||(26862900-26862970)
chr7 (310-375)||(29356981-29357046)
chr7 (305-385)||(640958-641037)
chr7 (305-365)||(5443609-5443668)
chr7 (318-378)||(7526105-7526165)
chr7 (318-362)||(18089794-18089838)
chr7 (307-374)||(29356910-29356975)
chr7 (305-375)||(316351-316419)
chr7 (310-365)||(31042139-31042194)
chr7 (316-378)||(46074145-46074205)
chr7 (317-374)||(2276368-2276423)
chr7 (319-365)||(5452667-5452713)
chr7 (304-362)||(26862991-26863049)
chr7 (304-365)||(316437-316498)
chr7 (305-362)||(12275741-12275798)
chr7 (305-365)||(40134465-40134523)
chr7 (318-378)||(49106895-49106953)
[»] chr4 (29 HSPs)
chr4 (318-379)||(9024002-9024063)
chr4 (305-365)||(21433873-21433933)
chr4 (310-378)||(34119627-34119695)
chr4 (318-365)||(33414003-33414050)
chr4 (318-380)||(16457905-16457967)
chr4 (305-378)||(38036314-38036385)
chr4 (305-374)||(41840671-41840740)
chr4 (305-378)||(52374996-52375069)
chr4 (317-365)||(7403174-7403222)
chr4 (304-374)||(993210-993278)
chr4 (310-365)||(2247580-2247635)
chr4 (304-362)||(31758690-31758748)
chr4 (304-361)||(2324762-2324819)
chr4 (318-374)||(3688561-3688617)
chr4 (318-365)||(993289-993336)
chr4 (318-380)||(19382284-19382344)
chr4 (318-365)||(21433965-21434012)
chr4 (318-365)||(52374917-52374964)
chr4 (318-380)||(7403076-7403138)
chr4 (319-376)||(1338524-1338580)
chr4 (340-380)||(8108951-8108991)
chr4 (305-361)||(15134646-15134702)
chr4 (305-365)||(41840593-41840653)
chr4 (318-365)||(15134567-15134614)
chr4 (318-360)||(3688663-3688705)
chr4 (335-365)||(16458028-16458058)
chr4 (319-365)||(16577253-16577299)
chr4 (322-368)||(25592292-25592338)
chr4 (324-365)||(17508765-17508806)
[»] chr5 (22 HSPs)
chr5 (305-365)||(41169469-41169529)
chr5 (305-359)||(22399776-22399830)
chr5 (305-362)||(42420096-42420153)
chr5 (305-365)||(4190138-4190200)
chr5 (318-365)||(17474865-17474912)
chr5 (304-374)||(25545296-25545364)
chr5 (319-365)||(32309690-32309736)
chr5 (305-365)||(3907656-3907714)
chr5 (305-365)||(25545220-25545278)
chr5 (317-365)||(28907368-28907416)
chr5 (317-365)||(28943763-28943811)
chr5 (305-365)||(40773123-40773183)
chr5 (320-375)||(4158173-4158228)
chr5 (318-361)||(13122043-13122086)
chr5 (318-377)||(17474793-17474852)
chr5 (305-356)||(33029573-33029624)
chr5 (304-370)||(3907732-3907798)
chr5 (318-352)||(4190072-4190106)
chr5 (324-378)||(9999775-9999829)
chr5 (305-378)||(36945684-36945754)
chr5 (305-377)||(40530052-40530120)
chr5 (304-374)||(43461952-43462022)
[»] chr8 (17 HSPs)
chr8 (317-365)||(20271104-20271152)
chr8 (317-365)||(21057732-21057780)
chr8 (305-365)||(36009901-36009961)
chr8 (318-374)||(43042130-43042186)
chr8 (304-363)||(38357571-38357630)
chr8 (305-360)||(2288678-2288733)
chr8 (305-366)||(40175892-40175954)
chr8 (304-365)||(2288599-2288660)
chr8 (304-365)||(40694691-40694752)
chr8 (305-365)||(27072894-27072954)
chr8 (305-365)||(35586482-35586542)
chr8 (302-365)||(17893317-17893380)
chr8 (302-365)||(40694613-40694676)
chr8 (302-365)||(40696264-40696327)
chr8 (318-356)||(34504386-34504424)
chr8 (304-354)||(42072671-42072721)
chr8 (316-365)||(40566546-40566595)
[»] scaffold0015 (1 HSPs)
scaffold0015 (318-365)||(201049-201096)
[»] chr6 (11 HSPs)
chr6 (305-356)||(24110072-24110123)
chr6 (304-362)||(1473618-1473676)
chr6 (318-378)||(1473687-1473748)
chr6 (305-362)||(12731557-12731614)
chr6 (305-362)||(34093891-34093948)
chr6 (318-369)||(24110149-24110200)
chr6 (320-365)||(4033086-4033131)
chr6 (305-362)||(4494397-4494454)
chr6 (305-365)||(24783945-24784005)
chr6 (318-365)||(5706711-5706758)
chr6 (320-365)||(17389991-17390036)
[»] scaffold0620 (1 HSPs)
scaffold0620 (305-362)||(9225-9282)
[»] scaffold0003 (1 HSPs)
scaffold0003 (318-365)||(136413-136460)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 1e-80; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 379 - 862
Target Start/End: Original strand, 11614168 - 11614658
Alignment:
Q  379 atcaaataaagttgcagaagaaaattttaaatagtgatgtggagagaaaatattatgttattggtacgaaattttcactgtcgtttaataatgacaaatc 478  Q
    |||||||||||||| |||||||||||| |||||  || | ||||||||||||||||||||||| |||||||||| |  |||||||||||| |||||||||    
T  11614168 atcaaataaagttgtagaagaaaatttaaaatatagacgaggagagaaaatattatgttattgatacgaaatttccgatgtcgtttaatagtgacaaatc 11614267  T
Q  479 tttgtaagggaacttatggggcacacaaagtgagttctctcctttcaactgaannnnnnn---catatgtaagagctataaatcgaacccctaaccactt 575  Q
    || ||| |||||  | || | |||| |||||| ||||||  ||||||||||||          |||||| | |||   || | | |||| |||| || ||    
T  11614268 ttcgtatgggaatctgtgagacacataaagtgggttctccactttcaactgaatttttttttccatatgcatgagtcgtagaccaaacctctaatcattt 11614367  T
Q  576 gcttgaggggtca---tcccttaccatttgaaccaattcgttggtaatgaaaattattatattattacaaaatataatctcacaattatataaa-gtg-- 669  Q
    |||| |||||||    ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||      
T  11614368 gcttaaggggtccaagtcttttaccatttgaactaattcgttggtaatgaaaattattatattattacaaaatataatctcacaatcatataaaagtgac 11614467  T
Q  670 --tggcataatt-ggtgtaaagaagagacactctttagtaattcctttggttctttttggcatgtgctttggtttctcaaactgcatttgg--ctagagt 764  Q
      |||||||||| ||||||||||   ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||   |||||     
T  11614468 cgtggcataatttggtgtaaaga---gacactctttagtaatttctttggttccttttggaatgtgctttggtttctcaaactgcatttggttatagaga 11614564  T
Q  765 ttaacttgaaatttcatgtgagtcttttttctccttgcattgcatgtttatgaattacatttttaggttcttcaagttcttttaatttacttgaagct 862  Q
    ||||||| ||||||||||||||||  |||| ||||  | ||||||||| |||||| |||||| |||||||||||  ||||||||||||  ||||||||    
T  11614565 ttaacttcaaatttcatgtgagtc--ttttatcct--ccttgcatgttgatgaatcacatttataggttcttcactttcttttaatttctttgaagct 11614658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 11613886 - 11614038
Alignment:
Q  11 actgcacaaaaggaagaaagattaccttatcttattctggtacttttcctaggtacaagaggatgttaagnnnnnnntgagctttctctttttatgctat 110  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||| ||||||       ||||||| |||||||||||||||    
T  11613886 actgcacaaaaggaagaaagattatcttatcttattttggtacttttcgtaggtacaataggacgttaagaaaagaatgagcttcctctttttatgctat 11613985  T
Q  111 acttagctacgcatagaagaaaaagcaaggcacatatacttagccaattgcac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11613986 acttagctacgcatagaagaaaaagcaaggcacatatacttagccaattgcac 11614038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 34437659 - 34437583
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    ||||||||||  | ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  34437659 gatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgttgctagcattcctcat 34437583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 38663730 - 38663803
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||| || ||||||||||||||| ||| ||| ||||| ||||||||| || ||||||||||||||||||    
T  38663730 atttggtgggtcccatgtgaattttaaccaattaaaaagagtatgttgaaaaatgcgtgttgctagcatttctc 38663803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 40669008 - 40669065
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    |||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||    
T  40669008 atttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 2542762 - 2542702
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  2542762 atttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 2542702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 45563145 - 45563201
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtg 361  Q
    |||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||    
T  45563145 atttggtggatctcatgtaaattttaaccgatcaaagaaagtgtgttgaaaagtgtg 45563201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 34437689 - 34437736
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  34437689 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgtt 34437736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 49822620 - 49822667
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  49822620 catgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 49822667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 31851952 - 31851989
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttgaaaa 31851989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 38948188 - 38948231
Alignment:
Q  322 tgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  38948188 tgaattctaacaaatcaaagagagtgtgttaaaaagtgtgtgtt 38948231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 49403551 - 49403602
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    ||||||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  49403551 atttggtgggtctcatgtgaattttaacaaataaaaaaaagtgtgttgaaaa 49403602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 31970166 - 31970120
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  31970166 atgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 31970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 45215406 - 45215480
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctca 379  Q
    |||||||||| ||||| ||||||||||  ||||||| ||| ||||| ||||||||||||||| ||  ||||||||    
T  45215406 atttggtggaactcatatgaattttaatcaatcaaaaagaatgtgtcgaaaagtgtgtgttggtaagatttctca 45215480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 40668976 - 40668922
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||| ||||||| ||||||||||||||||||  ||| |||||||||||||||||    
T  40668976 catgtgagttttaaccaatcaaagagagtgtgtt--aaaatgtgtgttgctagcatt 40668922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 7444360 - 7444420
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||| | || |||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  7444360 atttggtaggtcccatgtgaattttaactcatcaaagagaatgtgttgaaaagtgtttgtt 7444420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 16661863 - 16661815
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  16661863 tcatgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgtt 16661815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 25080116 - 25080152
Alignment:
Q  351 tgaaaagtgtgtgttgctagcatttctcatcaaataa 387  Q
    |||||||||||||||||||||||||||||| ||||||    
T  25080116 tgaaaagtgtgtgttgctagcatttctcataaaataa 25080152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 11614137 - 11614176
Alignment:
Q  256 ctctgacaggagatttgaaaataaagtcaaaatcaaataa 295  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  11614137 ctctgacaggagatttgaaaataaagtaaatatcaaataa 11614176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 2542780 - 2542850
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||||   ||||||||||||||| ||||||||||| ||||||| ||| || || |||||| ||||    
T  2542780 gatttggtggaagccatgtgaattttaaccaatcaaagagaatgtgttggaaaatgggtattgctaacatt 2542850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 11105951 - 11106009
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||| || |||| ||||||||| |||||||||||||| |||  |||||||||    
T  11105951 gatttggtggaacttatgtaaattttaaccaatcaaagagagtgagttagaaagtgtgt 11106009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 38663697 - 38663651
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| |||| ||||||||||||||||||||||| | ||||||    
T  38663697 atgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgtt 38663651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 34783443 - 34783484
Alignment:
Q  322 tgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtg 363  Q
    ||||||||||| ||||||||| |||||||||| |||||||||    
T  34783443 tgaattttaaccaatcaaagatagtgtgttgagaagtgtgtg 34783484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 35752133 - 35752190
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||| ||||||||||| ||| ||| | |||||||||||||  ||||||||||||||||    
T  35752133 tcatctgaattttaaccaataaaaaatagtgtgttgaaaacagtgtgttgctagcatt 35752190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 42251242 - 42251317
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  42251242 atttggtggatcccatgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 42251317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 16209435 - 16209366
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  16209435 atttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgtgttgctagcatt 16209366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 33171678 - 33171751
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    |||||||||  | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  33171678 atttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgtgtggtgctagcatttctc 33171751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 25666858 - 25666788
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||||||| |||||||||||||||||  ||||||| ||||||||||||||| |||||||| |||||||||    
T  25666858 atttggtgggtctcatgtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgtgttcctagcattt 25666788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 23001474 - 23001415
Alignment:
Q  321 gtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  23001474 gtgaattttaaccaatcaaagagagtatgttgaaaaatgtgtgttgctagtatttctcat 23001415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 3466447 - 3466374
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctca 379  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||| |||| | ||||||||| ||||||||||    
T  3466447 atttggtgggtctcatgtgaattttaaccaatcaaagagag-gtgttaaaaaatatgtgttgcttgcatttctca 3466374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 42029385 - 42029333
Alignment:
Q  322 tgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  42029385 tgaattttaacaaatcaaatacagtgtgttgaaaaatgtgtgttgctagcatt 42029333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 42029421 - 42029481
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| |||||||||||||||||| ||| ||| | ||||||||||||||||||||||    
T  42029421 atttggtgggtctcatgtgaattttaaccaataaaaaaaagtgtgttgaaaagtgtgtgtt 42029481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 42094294 - 42094341
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  42094294 catgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgtt 42094341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 18719792 - 18719734
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||| |||||    
T  18719792 gatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgt 18719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 37810206 - 37810153
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagt 358  Q
    ||||||||| || |||||||||| |||| |||||||||||||||||||||||||    
T  37810206 atttggtgggtcccatgtgaattataaccaatcaaagagagtgtgttgaaaagt 37810153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 44247598 - 44247529
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||| | ||||||||||| ||| ||||||||| ||| ||||||||| |||||||||||| ||||    
T  44247598 atttggtggaacccatgtgaatttcaaccaatcaaagatagtttgttgaaaaatgtgtgttgctaacatt 44247529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 33069225 - 33069169
Alignment:
Q  307 ttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtg 363  Q
    ||||||| ||| ||||||||||||||  |||||||| ||||||||||||||||||||    
T  33069225 ttggtgggtctaatgtgaattttaaccgatcaaagaaagtgtgttgaaaagtgtgtg 33069169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 41496119 - 41496059
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||| ||| | |||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  41496119 atttggtagattttatgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgtt 41496059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 29160891 - 29160828
Alignment:
Q  315 tctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||| |||||||  ||| |||||  ||||||||||||||||||||| ||||||||||||    
T  29160891 tctcatgtggattttaatcaattaaagatggtgtgttgaaaagtgtgtgttactagcatttctc 29160828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 44247617 - 44247664
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttg 352  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  44247617 atttgatggatcccatgtgaattttaaccaatcaaagagagtgtgttg 44247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 12703533 - 12703472
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||| |||| ||||||||||| ||||| ||||||||| ||||| ||||||| ||||||||    
T  12703533 gatttgatggaactcatgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgtt 12703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 42094263 - 42094196
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||| || |||||||||||||||    ||||||||||||||| |||  |||||||||||||||||||||    
T  42094263 atttggtgggtcccatgtgaattttaac----caaagagagtgtgttaaaa--tgtgtgttgctagcatttctc 42094196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 42251223 - 42251154
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||  | |||| ||||||||||  |||||||||||||||| ||||| ||||||||| |||||||    
T  42251223 atttggtgggacccatgcgaattttaaccgatcaaagagagtgtgtcgaaaaatgtgtgttgttagcatt 42251154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 1469799 - 1469739
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||  ||||||||||||||| ||| ||| ||||||||||||||| | ||||||    
T  1469799 atttggtggattccatgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgtt 1469739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 9430228 - 9430276
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||||| ||||||| ||| | ||||||||||||||||||    
T  9430228 tcatgtgaattttaaccaatcaaatagaatatgttgaaaagtgtgtgtt 9430276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 12779561 - 12779502
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||| ||||||||||||||| ||||||| ||| ||||||||||| ||| ||||    
T  12779561 atttggtggatcccatgtgaattttaaccaatcaaa-agaatgtgttgaaaaatgtatgtt 12779502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 45300459 - 45300503
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  45300459 catgtgaattttaaccaatcaaaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 21309746 - 21309695
Alignment:
Q  320 tgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagc 371  Q
    |||||||||||||||||||||||| ||||||   |||| |||||||||||||    
T  21309746 tgtgaattttaacaaatcaaagagtgtgtgtgttaaagagtgtgttgctagc 21309695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 25666890 - 25666937
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||| ||||||||| |||||||||||||||||||||| ||| ||||    
T  25666890 catgtggattttaacacatcaaagagagtgtgttgaaaattgtatgtt 25666937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 35715066 - 35715109
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||    
T  35715066 atgtaaattttaaccaatcaaagagagtgtattgaaaagtgtgt 35715109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 1930716 - 1930670
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||| ||||||| ||||||| ||||||| ||||||||    
T  1930716 atgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgtgtt 1930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 8090937 - 8090979
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtg 361  Q
    |||||||||||||||||| |||  |||||||||||||||||||    
T  8090937 atgtgaattttaacaaattaaattgagtgtgttgaaaagtgtg 8090979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 37810225 - 37810292
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||  | ||||||||||||||| |||||||| ||||||| || |||  ||||||||||||||||    
T  37810225 atttggtgggacccatgtgaattttaaccaatcaaagtgagtgtgatggaaa--gtgtgttgctagcatt 37810292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 2683454 - 2683515
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||| | ||| | ||||||||| ||||||| |||||||  |||||||||||||||    
T  2683454 gatttggtggaacccatataaattttaaccaatcaaaaagagtgtcgtgaaaagtgtgtgtt 2683515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 3466465 - 3466526
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| ||||| | ||||||||||||||| ||||||||||| | ||||  ||||||||||||    
T  3466465 gatttagtggaacccatgtgaattttaaccaatcaaagagactatgtttgaaagtgtgtgtt 3466526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 11532513 - 11532587
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||||  ||||||||||||| |||||||||||    
T  11532513 gatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgtgttgttagcatttctc 11532587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 40554117 - 40554190
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||| |||| ||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  40554117 atttgatggaactcatgtgagttttaaccaatcaaagagagtgtattgaaaattgtgtgttgctagcatttctc 40554190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 3901571 - 3901632
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3901571 gatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 3901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 3901560 - 3901485
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctca 379  Q
    ||||||||||  | ||||||||||||||| ||||||||||| ||||||||||| | ||||||||||| ||||||||    
T  3901560 gatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttgaaaaatatgtgttgctagtatttctca 3901485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 29955117 - 29955187
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||| |||||| ||| ||||||||||| ||||||  ||||||| ||||||||||||||||||||||||||    
T  29955117 atttgatggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgtgttgctagcattt 29955187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 30004271 - 30004341
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||| |||||| ||| ||||||||||| ||||||  ||||||| ||||||||||||||||||||||||||    
T  30004271 atttgatggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgtgttgctagcattt 30004341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 799334 - 799394
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctca 379  Q
    |||| ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||    
T  799334 atgtcaattttaaccaatcaaagagaaagtattgaaaagtgtgtgttgctagcatttctca 799394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 40763446 - 40763504
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||| |||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  40763446 gatttggtggaactcaggtgaattttaataaattaaagagagtatgttgaaaagtgtgt 40763504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 19560708 - 19560773
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctag 370  Q
    |||| ||||||| | ||||  ||||||| ||||||||||||||||||||||| |||||||||||||    
T  19560708 atttagtggatcccttgtgctttttaaccaatcaaagagagtgtgttgaaaaatgtgtgttgctag 19560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 46555587 - 46555640
Alignment:
Q  321 gtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| ||||||||    
T  46555587 gtgaattttaatcaatcaaagagagtgtgttaaaaagtgtgtgttcctagcatt 46555640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 14345211 - 14345151
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| ||||||||| |||||||| ||||||||| ||||||||||||| | ||||||    
T  14345211 atttggtgggtctcatgtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgtt 14345151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 36480767 - 36480707
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| ||| || ||||||||||||||| ||||||||||||||||||| |||| |||||||    
T  36480767 atttgttgggtcccatgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgtt 36480707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 35357377 - 35357326
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    ||||||||| || ||||||| ||||||| |||||||||||||||||||||||    
T  35357377 atttggtggttcacatgtgagttttaaccaatcaaagagagtgtgttgaaaa 35357326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 799192 - 799147
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtg 363  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||    
T  799192 catgtgaatttaaactaattaaagagagtgtgttgaaaagtgtgtg 799147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 31205450 - 31205495
Alignment:
Q  307 ttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttg 352  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||    
T  31205450 ttggtgggtctcatgtgaattttgaccaatcaaagagagtgtgttg 31205495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 36480785 - 36480846
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||  | ||||||||||||| | ||||||||||||  ||||||||||||||||||    
T  36480785 gatttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgtt 36480846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 32881076 - 32881146
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||||||| |||| ||| ||||||||| ||| ||| ||| ||||||||||| ||||||||| ||| ||||    
T  32881076 atttggtgggtctcgtgtaaattttaaccaataaaaaagattgtgttgaaaaatgtgtgttgttagtattt 32881146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 302 - 356
Target Start/End: Original strand, 37189220 - 37189274
Alignment:
Q  302 tagatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    ||||||| |||||  |||||||||||||||| ||||||||||||| |||| ||||    
T  37189220 tagatttagtggaattcatgtgaattttaaccaatcaaagagagtctgttaaaaa 37189274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 3300769 - 3300715
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||||||||||||  |||||||||| ||||||  ||| ||||||||||||||||||    
T  3300769 atgtgaattttaaccgatcaaagagaatgtgtt--aaaatgtgtgttgctagcattt 3300715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 11532480 - 11532423
Alignment:
Q  320 tgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttct 377  Q
    |||||||||| || ||||||| ||||| ||||  ||||||||||||||| ||||||||    
T  11532480 tgtgaattttgaccaatcaaaaagagtatgttagaaagtgtgtgttgctggcatttct 11532423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 44890430 - 44890483
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagca 372  Q
    |||| ||||||||| ||||||| ||||||||||||||| ||| ||||| |||||    
T  44890430 atgtaaattttaaccaatcaaaaagagtgtgttgaaaaatgtatgttgttagca 44890483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 45404174 - 45404125
Alignment:
Q  325 attttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||  ||||||| ||||||||||||||| | |||||||||||||||    
T  45404174 attttaagtaatcaaatagagtgtgttgaaaaatatgtgttgctagcatt 45404125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 7017179 - 7017240
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  7017179 atgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcatttctcat 7017240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 319 - 380
Target Start/End: Original strand, 7032537 - 7032598
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    |||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  7032537 atgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcatttctcat 7032598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 36992903 - 36992984
Alignment:
Q  306 tttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcatcaaataa 387  Q
    |||||||| ||||||||||||| |||||||| |||||| |||||||| ||| ||| |||||||||||||||||| |||||||    
T  36992903 tttggtgggtctcatgtgaattctaacaaattaaagagcgtgtgttggaaaatgtatgttgctagcatttctcaacaaataa 36992984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 11201354 - 11201278
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    ||||||||||  | ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  11201354 gatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgtgttgctagcattcctcat 11201278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 2276324 - 2276277
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2276324 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 2276277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 49106998 - 49107044
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  49106998 atgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 49107044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 3235619 - 3235559
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  3235619 atttgatgggtctcatgtgaattttaaccaatcaaagagagtgtattggaaagtgtgtgtt 3235559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 10056670 - 10056611
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttct 377  Q
    |||||||||||| || ||||||| ||||||||||||||||| |||||| ||| |||||||    
T  10056670 catgtgaattttgaccaatcaaaaagagtgtgttgaaaagtatgtgttactaacatttct 10056611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 3235651 - 3235705
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||||||| ||||||| ||||||||||| ||  |||||||||||||||||    
T  3235651 catgtgaattttaaccaatcaaaaagagtgtgttggaa--tgtgtgttgctagcatt 3235705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 12275816 - 12275877
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||  | ||| ||||||||||| |||| |||||||||||||| ||||||||||||    
T  12275816 gatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgtt 12275877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 26862970 - 26862900
Alignment:
Q  308 tggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    ||||| ||| ||||||||||||||| |||||| |||||||||||  ||| ||||||||| || ||||||||||    
T  26862970 tggtgaatcccatgtgaattttaaccaatcaaggagagtgtgtt--aaaatgtgtgttgataacatttctcat 26862900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 29356981 - 29357046
Alignment:
Q  310 gtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||||| ||| |||||||||||||||||||  |||||||||||||| | ||||||| | ||||||    
T  29356981 gtggatcccatatgaattttaacaaatcaaaccgagtgtgttgaaaaatatgtgttgttggcattt 29357046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 640958 - 641037
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcatcaaat 385  Q
    ||||||| |||||||||||||||||||| ||||||| ||| ||| || |||| ||||||||| || | |||||| ||||||    
T  640958 atttggtagatctcatgtgaattttaacgaatcaaaaagaatgtatt-aaaaatgtgtgttgttaacctttctcgtcaaat 641037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 5443609 - 5443668
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||| || |||||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  5443609 atttggtggagct-atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgtt 5443668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 7526165 - 7526105
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    |||||||||||||||||||||||| ||||||||   | | |||||||| ||||||||||||    
T  7526165 catgtgaattttaacaaatcaaagtgagtgtgtgttagaatgtgtgttactagcatttctc 7526105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 18089794 - 18089838
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||    
T  18089794 catgtgaattttaaccaaccaaagagagtgtgttaaaaagtgtgt 18089838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 29356975 - 29356910
Alignment:
Q  307 ttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||| | ||||||||||||||| |||||||||||||||||  |||| || |||| |||||||||    
T  29356975 ttggtggaacccatgtgaattttaaccaatcaaagagagtgtgt--aaaaatgagtgtcgctagcatt 29356910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 316419 - 316351
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    |||||||||| ||||||||||||||||| ||   ||| |||||||||  ||| ||||||||||||||||||    
T  316419 atttggtggaactcatgtgaattttaaccaagataagtgagtgtgtt--aaaatgtgtgttgctagcattt 316351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 31042194 - 31042139
Alignment:
Q  310 gtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| ||| ||||||||||||| ||||||||| | ||| ||||||||||||||||    
T  31042194 gtggaactcgtgtgaattttaaccaatcaaagataatgtattgaaaagtgtgtgtt 31042139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 46074145 - 46074205
Alignment:
Q  316 ctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||||||||||| ||| ||||||||||||||  ||| |||||||||||| | ||||||    
T  46074145 ctcatgtgaattttaaccaattaaagagagtgtgtt--aaaatgtgtgttgctaacttttctc 46074205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 2276368 - 2276423
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||||||||||||||| ||| ||||| ||||||||  ||| |||||||||||||||||    
T  2276368 tcatgtgaattttaaccaattaaagatagtgtgtt--aaaatgtgtgttgctagcatt 2276423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 5452667 - 5452713
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  5452667 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgtt 5452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 26862991 - 26863049
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||  | ||||||||||||||| ||| ||||||||| || ||||||||||||    
T  26862991 gatttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgt 26863049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 316437 - 316498
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| ||||| |||||||  |||||| | ||||||||||| ||||||||||| ||||||||    
T  316437 gatttagtggaactcatgtagattttatccaatcaaagagaatgtgttgaaaaatgtgtgtt 316498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 12275798 - 12275741
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||| || ||||||| ||||||| |||  |||||||||||||| |||||||||    
T  12275798 atttggtgggtcccatgtgatttttaaccaattgaagagagtgtgttggaaagtgtgt 12275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 40134465 - 40134523
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||  | ||||||||||||||| |||||  |||||||||||| ||||||||||||    
T  40134465 atttggtgggacccatgtgaattttaaccaatca--gagagtgtgttggaaagtgtgtgtt 40134523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 49106953 - 49106895
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||||||||  |||||||||| |||||||| |||  ||||||||||| ||||||||    
T  49106953 catgtgaattttaatcaatcaaagagtgtgtgttggaaa--gtgtgttgctaacatttctc 49106895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 9024002 - 9024063
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctca 379  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  9024002 catgtaaattttaacaaatcaaagagaatgtgttgaaaagtgtgtattgctagcatttctca 9024063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 21433933 - 21433873
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21433933 atttggtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 21433873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 34119695 - 34119627
Alignment:
Q  310 gtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    |||||||||||||||||||||||  ||||||  |||||||||||||| |||||||| ||||||||||||    
T  34119695 gtggatctcatgtgaattttaaccgatcaaaacgagtgtgttgaaaaatgtgtgttactagcatttctc 34119627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 33414050 - 33414003
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33414050 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 33414003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 16457967 - 16457905
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    ||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| |||||    
T  16457967 catgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgtgttgctagcattcctcat 16457905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 38036314 - 38036385
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||| ||| |||||||||||||||||||||||||||| | ||||||  ||| |||||||||||||||||||||    
T  38036314 atttgttgggtctcatgtgaattttaacaaatcaaagacaatgtgtt--aaaatgtgtgttgctagcatttctc 38036385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 374
Target Start/End: Original strand, 41840671 - 41840740
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    |||| ||||| ||||||||||||||||| ||||||| ||||||||||||| | | |||||||||||||||    
T  41840671 atttagtggaactcatgtgaattttaaccaatcaaatagagtgtgttgaacaatatgtgttgctagcatt 41840740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 52374996 - 52375069
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||| ||||||  |||||||||||||| ||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  52374996 atttgatggatcaaatgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgttgctaacatttctc 52375069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 7403174 - 7403222
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  7403174 tcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgtt 7403222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 993278 - 993210
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||  ||||||||||||||||| ||||||  ||||||||||||||  |||||||||||||||||    
T  993278 gatttggtgggactcatgtgaattttaaccaatcaa--agagtgtgttgaaagatgtgtgttgctagcatt 993210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 2247635 - 2247580
Alignment:
Q  310 gtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||    
T  2247635 gtggatctcgtgtgaattttaatcaattaaagagagtgtgttgaaaagtgtgtgtt 2247580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 31758748 - 31758690
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||| || |||||||||||||| ||||||| ||| |||||||||||||||||    
T  31758748 gatttggtggagcttatgtgaattttaaccaatcaaatagaatgtgttgaaaagtgtgt 31758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 2324819 - 2324762
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtg 361  Q
    ||||||||| | ||||||||||||||||| ||||||||||||| | ||||||||||||    
T  2324819 gatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtg 2324762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 3688617 - 3688561
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||||||| ||||||||| | ||||||||||| ||||||||| |||||||    
T  3688617 catgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgtgttgttagcatt 3688561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 993289 - 993336
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  993289 catgtgaattctaacaaatcaaagagagtttgttggaaagtgtgtgtt 993336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 19382344 - 19382284
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    ||||||||||||||| ||||||| ||||||||||| |||  |||||||||||||||| |||||    
T  19382344 catgtgaattttaaccaatcaaatagagtgtgttggaaa--gtgtgttgctagcattactcat 19382284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 21433965 - 21434012
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| |||||| |||||||||||||||||||| ||||    
T  21433965 catgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgtt 21434012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 52374964 - 52374917
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||    
T  52374964 catgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgtt 52374917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 7403138 - 7403076
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    ||||||| ||||||| ||| ||||||||| || | ||||||||||||| ||||||||||||||    
T  7403138 catgtgagttttaaccaattaaagagagtatgataaaaagtgtgtgttactagcatttctcat 7403076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 1338524 - 1338580
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttc 376  Q
    |||||||| ||||| |||||||||||||||| ||||| ||||||||||||| ||||||    
T  1338524 atgtgaatcttaaccaatcaaagagagtgtg-tgaaatgtgtgtgttgctaacatttc 1338580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 8108991 - 8108951
Alignment:
Q  340 agagagtgtgttgaaaagtgtgtgttgctagcatttctcat 380  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  8108991 agagagagtgttgaaaagtgagtgttgctagcatttctcat 8108951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 15134646 - 15134702
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtg 361  Q
    ||||||||  || ||||||||||||||| ||||| ||| ||||||||||||||||||    
T  15134646 atttggtgagtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtg 15134702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 41840653 - 41840593
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||| | ||||| ||||||||  ||||||||||||||||||||||| | ||||||    
T  41840653 atttggtggaacccatgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgtt 41840593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 15134614 - 15134567
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||| ||| ||||||| ||||||||||| ||||||||    
T  15134614 catgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgtt 15134567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 3688663 - 3688705
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgt 360  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||    
T  3688663 catgtgaattttaaccaatcaaagaaagtgtgttggaaagtgt 3688705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 16458028 - 16458058
Alignment:
Q  335 atcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||||||||||||||||||||    
T  16458028 atcaaagagagtgtgttgaaaagtgtgtgtt 16458058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 16577299 - 16577253
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||| ||||||||||||||||| ||| ||||||||||| ||||||||    
T  16577299 atgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgtt 16577253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 25592292 - 25592338
Alignment:
Q  322 tgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgct 368  Q
    ||||||||||| ||| ||||||||||| || ||||||||||||||||    
T  25592292 tgaattttaaccaatgaaagagagtgtattaaaaagtgtgtgttgct 25592338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 17508806 - 17508765
Alignment:
Q  324 aattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  17508806 aattttaataaatcaaaaagagtgtgttgaaaaatgtgtgtt 17508765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 41169469 - 41169529
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||    
T  41169469 atttggtggatcacatgtgaattttaacggatcaaagagagtgtgttgaaaaatgtgtgtt 41169529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 22399830 - 22399776
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtg 359  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||||||||||||||    
T  22399830 atttggtgggtctcatgtgaattttatccaatcaaaaagagtgtgttgaaaagtg 22399776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 42420096 - 42420153
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| ||||    
T  42420096 atttgatggatctcatgtgagttttaaccaatcaaatagagtgtgttgaaaagcgtgt 42420153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 4190138 - 4190200
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagaga--gtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| || |||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  4190138 atttggtgggtcccatgtgaattttaacctatcaaagagaccgtgtgttgaaaagtgtgtgtt 4190200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 17474865 - 17474912
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||    
T  17474865 catgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgtt 17474912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 25545296 - 25545364
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||  |||| |||||||||||| ||||||||||||||||||  ||| ||||||||| |||||||    
T  25545296 gatttggtgggactcacgtgaattttaaccaatcaaagagagtgtgtt--aaaatgtgtgttgatagcatt 25545364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 32309690 - 32309736
Alignment:
Q  319 atgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||    
T  32309690 atgtaaattttaacaaatcaaagagaatgcgttgaaaagtgtgtgtt 32309736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 3907714 - 3907656
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| || ||||||||||||||| ||||||  ||||||||||||||||||| ||||    
T  3907714 atttggtgggtcccatgtgaattttaaccaatcaa--agagtgtgttgaaaagtgtttgtt 3907656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 25545278 - 25545220
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||| |||| |||||||||||||||||| ||||||  ||||||||||||||| ||||||||    
T  25545278 atttagtgggtctcatgtgaattttaaccaatcaa--agagtgtgttgaaaaatgtgtgtt 25545220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 28907416 - 28907368
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  28907416 tcatgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgtt 28907368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 28943811 - 28943763
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  28943811 tcatgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgtt 28943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 40773183 - 40773123
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||||||||||||| || ||| ||| | ||||||||||||| | ||||||    
T  40773183 atttggtggatctcatgtgaattttgaccaataaaaaatagtgtgttgaaaattatgtgtt 40773123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 4158173 - 4158228
Alignment:
Q  320 tgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcattt 375  Q
    ||||||||||||| ||||||||||||| | || |||| |||||||||||| |||||    
T  4158173 tgtgaattttaaccaatcaaagagagtatattaaaaaatgtgtgttgctatcattt 4158228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 13122086 - 13122043
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtg 361  Q
    ||||||||||||| | ||||||||||||| ||||||||||||||    
T  13122086 catgtgaattttacccaatcaaagagagtatgttgaaaagtgtg 13122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 17474852 - 17474793
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttct 377  Q
    ||||||||||||||||||||||| | |||||||   ||| ||||||| ||||||||||||    
T  17474852 catgtgaattttaacaaatcaaataaagtgtgtgttaaaatgtgtgtcgctagcatttct 17474793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 33029573 - 33029624
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    |||||||||  ||||||||| |||||||  ||||||||||||||||||||||    
T  33029573 atttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttgaaaa 33029624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 3907732 - 3907798
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctag 370  Q
    ||||||||||  | ||||||||||||||| ||||||| ||| ||||||| |||  ||||||||||||    
T  3907732 gatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgttgctag 3907798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 352
Target Start/End: Complemental strand, 4190106 - 4190072
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttg 352  Q
    ||||||||||||||| |||||||||||||||||||    
T  4190106 catgtgaattttaaccaatcaaagagagtgtgttg 4190072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 9999775 - 9999829
Alignment:
Q  324 aattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||| ||||||||| |||||||   ||| |||||||||||||||||||||    
T  9999775 aattttaaccaatcaaagacagtgtgtgttaaaatgtgtgttgctagcatttctc 9999829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 305 - 378
Target Start/End: Original strand, 36945684 - 36945754
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    ||||||||||| |||||||||| ||||| ||||||||| ||||| ||  ||| ||||||||||| |||||||||    
T  36945684 atttggtggatttcatgtgaatattaaccaatcaaagaaagtgtttt--aaaatgtgtgttgct-gcatttctc 36945754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 40530052 - 40530120
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttct 377  Q
    |||| ||||||||| ||||||||||||||||| ||  |||||||||| ||||   ||||||||||||||||||    
T  40530052 atttagtggatctcctgtgaattttaacaaattaa--agagtgtgttaaaaa--atgtgttgctagcatttct 40530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 43462022 - 43461952
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||| ||| |||||||||||||  || ||| ||||||||||  ||| |||||||||||| ||||    
T  43462022 gatttggtggaactcgtgtgaattttaaccgattaaaaagagtgtgttagaaaatgtgtgttgctaacatt 43461952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 20271104 - 20271152
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  20271104 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgtt 20271152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 21057732 - 21057780
Alignment:
Q  317 tcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  21057732 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgtt 21057780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 36009901 - 36009961
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| | |||||||||||||||| || |||||||||||||||| ||||||||||||    
T  36009901 atttggtgggtgtcatgtgaattttaaccaaccaaagagagtgtgttggaaagtgtgtgtt 36009961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 43042186 - 43042130
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatt 374  Q
    ||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||    
T  43042186 catgtgaattttaatcaatcaaagagagtgcgttggaaagtgtgtgttgctagcatt 43042130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 38357630 - 38357571
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtg 363  Q
    |||||||||| |||||||||| ||| ||| ||||||||||||||||||| ||||||||||    
T  38357630 gatttggtgggtctcatgtgagtttcaactaatcaaagagagtgtgttggaaagtgtgtg 38357571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 2288678 - 2288733
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgt 360  Q
    ||||| |||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  2288678 atttgatggatcccatgtgaattttaaccaatcaaagagagattgttgaaaagtgt 2288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 40175954 - 40175892
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaat-caaagagagtgtgttgaaaagtgtgtgttg 366  Q
    |||||||||||| ||||||||||||||| |||  ||| | |||||||||||||||||||||||    
T  40175954 atttggtggatcccatgtgaattttaaccaataaaaaaaaagtgtgttgaaaagtgtgtgttg 40175892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 2288660 - 2288599
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| | | ||||| ||||||||| ||||||||||||||||||  ||||||||||||    
T  2288660 gatttggtgaaacccatgtaaattttaaccaatcaaagagagtgtgttcgaaagtgtgtgtt 2288599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 40694691 - 40694752
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||  | ||||||||||||||| ||| ||| ||||||| ||||||||||||||||    
T  40694691 gatttggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgtgtt 40694752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 27072894 - 27072954
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| ||  |||| ||||||||| ||||||| ||| ||||||||||||||||||||    
T  27072894 atttggtgggtccaatgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgtt 27072954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 35586482 - 35586542
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| ||  |||||||||||||  ||| ||||||| ||||||||||||||||||||    
T  35586482 atttggtgggtcctatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgtgtt 35586542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 17893380 - 17893317
Alignment:
Q  302 tagatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||| ||||| ||||||||| ||||||| ||||||||||||| |||| |||| ||| ||||    
T  17893380 tagatttagtggaactcatgtgagttttaactaatcaaagagagtctgttaaaaaatgtatgtt 17893317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 40694676 - 40694613
Alignment:
Q  302 tagatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||| || ||||| ||||||||| ||||||| ||| ||||||| ||| ||||||||    
T  40694676 tagatttggtgggtcgcatgttaattttaaccaatcaaatagattgtgttgtaaaatgtgtgtt 40694613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 40696264 - 40696327
Alignment:
Q  302 tagatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    |||||||||||| || ||||| ||||||||| ||| ||||||| ||||||| ||| ||||||||    
T  40696264 tagatttggtgggtcgcatgttaattttaaccaatgaaagagattgtgttgcaaaatgtgtgtt 40696327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 34504424 - 34504386
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  34504424 catgtgaattttaaccaatcaaaaagagtgtgttgaaaa 34504386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 42072721 - 42072671
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaa 354  Q
    ||||||||||  | ||||||||| ||||| |||||||||||||||||||||    
T  42072721 gatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgttgaa 42072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 40566546 - 40566595
Alignment:
Q  316 ctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||||||| ||||||| |||| |||||||||| | ||||||    
T  40566546 ctcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgtt 40566595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 201049 - 201096
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  201049 catgtgaatcttaacaaatcaaagagagtgtgttgataagtgtgtgtt 201096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 24110123 - 24110072
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaa 356  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  24110123 atttggtggatcacatatgaattttaaccaatcaaagagagtgtgttgaaaa 24110072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 1473676 - 1473618
Alignment:
Q  304 gatttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  1473676 gatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgt 1473618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 1473687 - 1473748
Alignment:
Q  318 catgtgaattttaaca-aatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctc 378  Q
    |||||||||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||    
T  1473687 catgtgaatttttaaacaatcaaagagagtatgttgaaaagtgtgtgttgctggcatttctc 1473748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 12731614 - 12731557
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||| ||| |||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  12731614 atttgatgggtctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 12731557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 34093891 - 34093948
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    |||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||    
T  34093891 atttagtggatcccatgtgaattttaaccaatcaaagagattatgttgaaaagtgtgt 34093948  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 24110149 - 24110200
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgttgcta 369  Q
    ||||||||||||||| ||| ||||||||| | ||||||||||||||||||||    
T  24110149 catgtgaattttaaccaattaaagagagtatattgaaaagtgtgtgttgcta 24110200  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 4033086 - 4033131
Alignment:
Q  320 tgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  4033086 tgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgtt 4033131  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 4494454 - 4494397
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    ||||||||||||  | |||||||||||| ||||||||| ||||||||||||| |||||    
T  4494454 atttggtggatcagacgtgaattttaaccaatcaaagaaagtgtgttgaaaaatgtgt 4494397  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 24783945 - 24784005
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| |||||||||||| ||||||||  ||||||||| |||||||| |||| ||||||||    
T  24783945 atttgatggatctcatgtaaattttaatcaatcaaagatagtgtgttaaaaaatgtgtgtt 24784005  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 5706711 - 5706758
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  5706711 catgtaaattttaatcaatcaaagagagtgtgttgaaaagtatgtgtt 5706758  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 17389991 - 17390036
Alignment:
Q  320 tgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||||||||| |||||||||||| |||||||||| || |||||    
T  17389991 tgtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgtt 17390036  T

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Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 9225 - 9282
Alignment:
Q  305 atttggtggatctcatgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgt 362  Q
    |||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||    
T  9225 atttagtggatcccatgtgaattttaaccaatcaaagagattatgttgaaaagtgtgt 9282  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 136413 - 136460
Alignment:
Q  318 catgtgaattttaacaaatcaaagagagtgtgttgaaaagtgtgtgtt 365  Q
    ||||||| ||||||| ||||||| ||||||||||||||| ||||||||    
T  136413 catgtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtt 136460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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