View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701-Insertion-2 (Length: 284)
Name: NF1701-Insertion-2
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 30909879 - 30909601
Alignment:
| Q |
10 |
gatgttgtaatctgagtcagcaaaaataatattcgtgttaactaaatctctgaatatatgtgcgcgcttttgtcaacaacaaaaaatatgtgtacttgct |
109 |
Q |
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| T |
30909879 |
gatgttgtaacctgagtcagtaaaaataatattcgtgttaactaaatctctgaatatatgtgcgcgcttttgtccacaacaaaaaatatgtgtacttgtt |
30909780 |
T |
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| Q |
110 |
tggttcatcacattaacttgtctcatatttaagattttagtataattatag----ttagtacatcaaatatggaaaatatttcttcataatcaaatggca |
205 |
Q |
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| T |
30909779 |
tggttcatcacattaacttgtctcatatttaagattttagcataattatagttaattagtacatcaaatatggaaaatatttcttcataatcaaatggca |
30909680 |
T |
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| Q |
206 |
tgtgagaatatgctgcaacatatctgctatgatttatttaccttatgttcttcacatgtgtaaccttgtgtctctacca |
284 |
Q |
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| T |
30909679 |
tgtgagaatatgctgcaacatgtctgctatgatttatttaccttatgttcttcacatgtgtaaccttgtgtctctacca |
30909601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 30903183 - 30903136
Alignment:
| Q |
237 |
atttatttaccttatgttcttcacatgtgtaaccttgtgtctctacca |
284 |
Q |
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| T |
30903183 |
atttatttaccttatgttcttcacatgtgtacccttgtgtctctacca |
30903136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 11292695 - 11292641
Alignment:
| Q |
230 |
tgctatgatttatttaccttatgttcttcacatgtgtaaccttgtgtctctacca |
284 |
Q |
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| T |
11292695 |
tgctatgatttaattaccttatgttcttcacaagtgtaaccttgtgtctctacca |
11292641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 11298033 - 11297997
Alignment:
| Q |
245 |
accttatgttcttcacatgtgtaaccttgtgtctcta |
281 |
Q |
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| T |
11298033 |
accttatgttcttcacatgtgtaaccttgtgtctcta |
11297997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 11298152 - 11298102
Alignment:
| Q |
8 |
ccgatgttgtaatctgagtcagcaaaaataatattcgtgttaactaaatct |
58 |
Q |
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| T |
11298152 |
ccgatgttgtagcctgagttagcaaaaataatattagtgttaactaaatct |
11298102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 11292805 - 11292757
Alignment:
| Q |
8 |
ccgatgttgtaatctgagtcagcaaaaataatattcgtgttaactaaat |
56 |
Q |
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| T |
11292805 |
ccgatgttgtagcctgagttagcaaaaataatattattgttaactaaat |
11292757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 36662150 - 36662106
Alignment:
| Q |
240 |
tatttaccttatgttcttcacatgtgtaaccttgtgtctctacca |
284 |
Q |
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| T |
36662150 |
tatttaccttatgttcttcacatgtgtaaccttgtgtttctacca |
36662106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 36706262 - 36706307
Alignment:
| Q |
239 |
ttatttaccttatgttcttcacatgtgtaaccttgtgtctctacca |
284 |
Q |
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| T |
36706262 |
ttatttaccttatgttcttcacatgggtaaccttgtggctcaacca |
36706307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 36713907 - 36713949
Alignment:
| Q |
240 |
tatttaccttatgttcttcacatgtgtaaccttgtgtctctac |
282 |
Q |
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| T |
36713907 |
tatttaccgtatgttcttcacacgtataaccttgtgtctctac |
36713949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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