View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701-Insertion-3 (Length: 226)
Name: NF1701-Insertion-3
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 31603595 - 31603416
Alignment:
| Q |
46 |
aaagaatcttgattatgaaagaatcattaatgattttgcaatgnnnnnnn----tgtaaggagaataatattcaaatagttagaacgacatcattttatt |
141 |
Q |
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| T |
31603595 |
aaagaatcttgattatgaaagaatcattaatgattttgcaatgaaaaaaaaaaatgtaaggagaataatattcaaatagttagaacgacgtcatttaatt |
31603496 |
T |
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| Q |
142 |
acttttcccatgacactcaaagtctcagggctgacctgagtagcatccttttctattgtgctttgaccaatgattcttcgttc |
224 |
Q |
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| T |
31603495 |
acttttcccatgacactc--agtctcaggactgacctaagtagcatcc-ttcctactgtgctccgaccaatgaatctccgttc |
31603416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 27668455 - 27668491
Alignment:
| Q |
50 |
aatcttgattatgaaagaatcattaatgattttgcaa |
86 |
Q |
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| T |
27668455 |
aatcttgattatgaaagaatcattaatgattttgcaa |
27668491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 4552861 - 4552890
Alignment:
| Q |
57 |
attatgaaagaatcattaatgattttgcaa |
86 |
Q |
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| T |
4552861 |
attatgaaagaatcattaatgattttgcaa |
4552890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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