View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701-Insertion-5 (Length: 182)
Name: NF1701-Insertion-5
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 7e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 7e-60
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 24384216 - 24384071
Alignment:
| Q |
6 |
caacttgaaccctaaacaaatattatttttcgatggaattttctgaaaggctattggttggattttatttgaaacaaattaattaactattaaattatat |
105 |
Q |
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| T |
24384216 |
caacttgaaccctaaacaaatattatttttcgatggaattttctaaaaggttattggttggattttatttgaaacaaattaattaactattaaattatat |
24384117 |
T |
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| Q |
106 |
ttatgnnnnnnnatccataaattaaattttatgttgatattgtacc |
151 |
Q |
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| T |
24384116 |
ttatgtttttttatccataaattaaattttatgttgatattgtacc |
24384071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 24390337 - 24390302
Alignment:
| Q |
75 |
tgaaacaaattaattaactattaaattatatttatg |
110 |
Q |
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| T |
24390337 |
tgaaacaaattaattaattattaaattaaatttatg |
24390302 |
T |
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