View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1701-Insertion-6 (Length: 497)
Name: NF1701-Insertion-6
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1701-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 29718380 - 29718097
Alignment:
| Q |
9 |
atccttgctttatgata-gagacaagaccgtcattaaaacaaa-cagcaaa-tgataacacatcatgaataacatagtgtacccatttcgctgttgttgg |
105 |
Q |
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| T |
29718380 |
atccttgctttatgataagagacaataccgtcgtgaaaacaaaacagcaaaatgataacac--catgaataacatagtgtacc-atttcgctgttgttgg |
29718284 |
T |
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| Q |
106 |
tggcgatggtggttgtgaggatgca-tca-gaagctgctcataagtatgatagtcaccacggtgaagagagtgctcagcatcacca--ccattgatggcg |
201 |
Q |
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| T |
29718283 |
tggcgatggtggttgtgaggatgcaatcatgaagctgctcataagtatgatagtcaccacggtgaagagggtgctcagcatcaccaacccattgatggcg |
29718184 |
T |
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| Q |
202 |
gtaaccatttgctgttggaacaatttctcctcgg-cataatg-tcattcgg-ttctgtgttg-aaaattgatgtgattttgatgagt |
284 |
Q |
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| T |
29718183 |
gtaaccatttgctgttggaacaatttctcctcggccataatgttcattcggtttctgtgttgaaaaattgatgtgattttgatgagt |
29718097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 286 - 459
Target Start/End: Complemental strand, 29717776 - 29717605
Alignment:
| Q |
286 |
agttacagaaaaatgagattataatttaatatttaaaagatatgatagttggaaagcaaaatacatgtaaagaaacaaattcaatacaaaaattaggtct |
385 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29717776 |
agttacagaaaa-tgagattataatttaatatttaaaagatatgaaagttggaaagcaaa-tacatgtaaagaaacaaattcaatacaaaaattaggtct |
29717679 |
T |
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| Q |
386 |
aaagaagtaaaaatagtacaatcaaaccagaagacatgccaaattttatgagcataaattgtcacgtatcattt |
459 |
Q |
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| T |
29717678 |
aaagaagtaaaaatagtacaatcaaaccagaagacatgccaaattttatgagcataaattgtcacgtatcattt |
29717605 |
T |
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