View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701-Insertion-7 (Length: 876)

Name: NF1701-Insertion-7
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701-Insertion-7
NF1701-Insertion-7
[»] chr6 (10 HSPs)
chr6 (26-538)||(7325217-7325728)
chr6 (637-829)||(7324937-7325116)
chr6 (822-876)||(7324599-7324653)
chr6 (669-733)||(4641048-4641112)
chr6 (637-741)||(7308790-7308891)
chr6 (640-741)||(7313959-7314060)
chr6 (95-178)||(5407907-5407990)
chr6 (95-178)||(5412232-5412315)
chr6 (107-178)||(10456494-10456565)
chr6 (494-523)||(8096339-8096368)
[»] chr3 (4 HSPs)
chr3 (638-876)||(21334737-21334977)
chr3 (81-145)||(25634823-25634887)
chr3 (91-178)||(7763524-7763611)
chr3 (91-178)||(23198965-23199052)
[»] scaffold0477 (1 HSPs)
scaffold0477 (669-733)||(7003-7067)
[»] chr7 (2 HSPs)
chr7 (760-863)||(7392860-7392963)
chr7 (61-178)||(6047803-6047920)
[»] chr8 (2 HSPs)
chr8 (91-172)||(34255332-34255413)
chr8 (126-175)||(24570463-24570512)
[»] chr5 (1 HSPs)
chr5 (91-172)||(20043958-20044039)
[»] chr4 (1 HSPs)
chr4 (91-178)||(34571424-34571512)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 26 - 538
Target Start/End: Complemental strand, 7325728 - 7325217
Alignment:
Q  26 ccaaatatgtatttcatattgtaaaattc-acatttaaggttgattcttagtgttcttacatccgtctctccagactaaccctgagtattattagcacca 124  Q
    |||||||||||||||| ||||||||| || ||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  7325728 ccaaatatgtatttcacattgtaaaaatccacatttaaggttgatcctaagtgttcttacgtccgcctctccagactaaccctgagtattattagcacca 7325629  T
Q  125 tctctctaagatgatgttgagggtatgacgtctctctagacgaaca-cccctctataggagggagctccaccttattccttcttaaaataagacaccact 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  7325628 tctctctaagatgatgttgagggtatgacgtctctctagacgaacaccccctctacaggagggagctccaccttattccttcttaaaataagacatcact 7325529  T
Q  224 agagcactcgtgtcctcatagttctctgaggcaacttaaaatttagagttatcat-ccccccaccnnnnnnnnnnnnnntaccacttaggacaagccctc 322  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||               || ||| |||||||||||||    
T  7325528 agagcactcatgtcctcatagttctctgaggcaacttaaaatttagagtcatcatcccccccacccacacacacac----actactcaggacaagccctc 7325433  T
Q  323 ttgaagtgaaaagtcttctgacattagaagcacttgtacctttgacttgccaccgcccttcgagtttccacaaactataaccgttgcttccggtaaactt 422  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  7325432 ttgaaatgaaaagtcttctgacattagaagcacttgtaccttcgacttgccaccgcccttcgagtttccacaaactaaaactgttgcttccggtaaactt 7325333  T
Q  423 ttcaatgtaccacttggtacccatggtgatttctcaacgatttgttatgattgccccattgtggatgtcaattgttgtgaattcgaacagagtcacacca 522  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7325332 ttcaatgtaccacttggtacccatggtgatttctcaatgatttgttctgattgccccattgtggatgtcaattgttgtgaattcgaacagagtcacacca 7325233  T
Q  523 aaattgatgtgtggat 538  Q
     | |||||||||||||    
T  7325232 gacttgatgtgtggat 7325217  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 637 - 829
Target Start/End: Complemental strand, 7325116 - 7324937
Alignment:
Q  637 cacacaatatttgtttacctgattcggtcagcaatgacctactttggaggagagagcaactctctccgttccactaatcaatagagtaactttacaaaga 736  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||             |||||||| ||||||||||||||||||||||||||| |||    
T  7325116 cacacaatatttgtttacctggttcggtcaataatgacctactttgg-------------tctctccgatccactaatcaatagagtaactttacacaga 7325030  T
Q  737 gattccnnnnnnnnctacaaaggtcagtcttcaaacttaattctactttttcctaaatcgcttcctttgaccagcagactctatgatttaata 829  Q
    ||||||         |||||  ||| |||||||||| ||||| ||||||||||| |||||||||||||||||| || ||||||| ||||||||    
T  7325029 gattccaatagaaattacaagagtcggtcttcaaacctaattatactttttcctgaatcgcttcctttgaccaacatactctattatttaata 7324937  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 822 - 876
Target Start/End: Complemental strand, 7324653 - 7324599
Alignment:
Q  822 atttaatatcctaaaaggtgaatccaatgatgattctcccaaacgtagagctctt 876  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  7324653 atttaatatcctaaaaggtgaatcgaatgatgattctcccaaacctagagctctt 7324599  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 669 - 733
Target Start/End: Complemental strand, 4641112 - 4641048
Alignment:
Q  669 aatgacctactttggaggagagagcaactctctccgttccactaatcaatagagtaactttacaa 733  Q
    ||||||||||| | |||||||||||| |||||||| |||||||| |||| |||||||||||||||    
T  4641112 aatgacctactctagaggagagagcagctctctccattccactagtcaagagagtaactttacaa 4641048  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 741
Target Start/End: Complemental strand, 7308891 - 7308790
Alignment:
Q  637 cacacaatatttgtttacctgattcggtcagcaatgacctactttggaggagagagcaactctctccgttccactaatcaatagagtaactttacaaaga 736  Q
    ||||||||||||||||||    ||| ||||  ||||| ||||| ||| |||||||||| |||| |  |||||||||||||| ||||||||||||||||||    
T  7308891 cacacaatatttgtttactcagttcagtcaataatgaactactatgg-ggagagagcatctcttt--gttccactaatcaaaagagtaactttacaaaga 7308795  T
Q  737 gattc 741  Q
    |||||    
T  7308794 gattc 7308790  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 640 - 741
Target Start/End: Complemental strand, 7314060 - 7313959
Alignment:
Q  640 acaatatttgtttacctgattcggtcagcaatgacctactttggaggagagagcaactctctccgttccactaatcaatagagtaactttacaaagagat 739  Q
    ||||||||||||||||   |||  |||  ||||| ||||||||| ||||| ||||  ||||||||||| ||||||||| |||||||||||| | ||||||    
T  7314060 acaatatttgtttacccagttcaatcaataatgaactactttgggggagaaagcagttctctccgttcaactaatcaagagagtaactttatagagagat 7313961  T
Q  740 tc 741  Q
    ||    
T  7313960 tc 7313959  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 5407907 - 5407990
Alignment:
Q  95 ccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacccctcta 178  Q
    ||||||||||| |||||||| ||| ||||  ||||| | | |||||||||| || | ||||||||| ||||||||||| |||||    
T  5407907 ccagactaaccatgagtattcttaccaccgcctctccaggctgatgttgagtgtttaacgtctctccagacgaacaccactcta 5407990  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 5412232 - 5412315
Alignment:
Q  95 ccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacccctcta 178  Q
    ||||||||||| |||||||| ||| ||||  ||||| | | |||||||||| || | ||||||||| ||||||||||| |||||    
T  5412232 ccagactaaccatgagtattcttaccaccgcctctccaggctgatgttgagtgtttaacgtctctccagacgaacaccactcta 5412315  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 10456494 - 10456565
Alignment:
Q  107 tgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacccctcta 178  Q
    |||||||| || ||||||  |||||| |||||||||||| || | | ||||||| |||||||||||||||||    
T  10456494 tgagtattcttcgcaccacttctctaggatgatgttgagtgtttaatgtctctccagacgaacacccctcta 10456565  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 8096368 - 8096339
Alignment:
Q  494 ttgttgtgaattcgaacagagtcacaccaa 523  Q
    ||||||||||||||||||||||||||||||    
T  8096368 ttgttgtgaattcgaacagagtcacaccaa 8096339  T

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Target: chr3 (Bit Score: 65; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 638 - 876
Target Start/End: Original strand, 21334737 - 21334977
Alignment:
Q  638 acacaatatttgtttacctgattcggtc-agcaatgacctactttggaggagagagcaactctctccgttccactaatcaatagagtaactttacaaaga 736  Q
    |||||||||||||||| |  |||||||| |  ||||||||||| ||| ||||||| ||||| |||||||  |||||||||| |||||||||||||| | |    
T  21334737 acacaatatttgtttatccaattcggtccaataatgacctactctgggggagagaccaactttctccgtatcactaatcaagagagtaactttacacaaa 21334836  T
Q  737 gattccnnnnnnnnctacaaaggtcagtcttcaaacttaattctact-ttttcctaaatcgcttcctttgaccagcagactctatgatttaatatcctaa 835  Q
    ||||||         |||||    |||||||||||| |||||||||  |||||| ||||| ||||   ||||||  ||||| ||||||||| |||||||     
T  21334837 gattccaaaaggaattacaagaaccagtcttcaaacctaattctacccttttcccaaatctcttctcgtgaccaagagactatatgatttagtatcctag 21334936  T
Q  836 aaggtgaatccaatgatgattctcccaaacgtagagctctt 876  Q
    ||||||||||||| |||||||||||||| | ||||||||||    
T  21334937 aaggtgaatccaaagatgattctcccaaccctagagctctt 21334977  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 25634887 - 25634823
Alignment:
Q  81 ttacatccgtctctccagactaaccctgagtattattagcaccatctctctaagatgatgttgag 145  Q
    |||| |||||||||||||||| ||| |||||||| ||||||||  ||||||| | ||||||||||    
T  25634887 ttacctccgtctctccagactgaccatgagtattcttagcaccgcctctctaggctgatgttgag 25634823  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 7763611 - 7763524
Alignment:
Q  91 ctctccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacccctcta 178  Q
    ||||||||||||||| |||||||| ||| ||||  |||||   | |||||||||| || | ||||||||| ||||||||||| |||||    
T  7763611 ctctccagactaaccatgagtattgttaccaccgcctctcctggctgatgttgagtgtttaacgtctctccagacgaacaccactcta 7763524  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 23198965 - 23199052
Alignment:
Q  91 ctctccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacccctcta 178  Q
    ||||||||||||||| |||||||| | | ||||  ||||| | | |||||||||| || | ||||||||| ||||||||||| |||||    
T  23198965 ctctccagactaaccatgagtattctcaccaccgcctctccaggctgatgttgagtgtttaacgtctctccagacgaacaccactcta 23199052  T

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Target: scaffold0477 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 669 - 733
Target Start/End: Original strand, 7003 - 7067
Alignment:
Q  669 aatgacctactttggaggagagagcaactctctccgttccactaatcaatagagtaactttacaa 733  Q
    ||||||||||| | |||||||||||| |||||||| |||||||| |||| |||||||||||||||    
T  7003 aatgacctactctagaggagagagcagctctctccattccactagtcaagagagtaactttacaa 7067  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 760 - 863
Target Start/End: Original strand, 7392860 - 7392963
Alignment:
Q  760 tcagtcttcaaacttaattctac-tttttcctaaatcgcttcctttgaccagcagactctatgatttaatatcctaaaaggtgaatccaatgatgattct 858  Q
    ||||||||||||| ||||||||| ||||| ||||||| || || |||||||  |||||| ||| |||| ||| ||| |||||||||||||  ||||||||    
T  7392860 tcagtcttcaaacctaattctaccttttttctaaatctctacccttgaccaagagactcaatg-tttagtattctacaaggtgaatccaacaatgattct 7392958  T
Q  859 cccaa 863  Q
    |||||    
T  7392959 cccaa 7392963  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 178
Target Start/End: Complemental strand, 6047920 - 6047803
Alignment:
Q  61 aaggttgattcttagtgttcttacatccgtctctccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctc 160  Q
    ||||||||||   ||| ||||||| |||| |||| |||||| ||| |||||||| ||  ||||  ||||| | | |||||||||| || | |||||||||    
T  6047920 aaggttgattacaagtattcttacctccgcctcttcagactgaccttgagtattctttccaccgcctctccaggctgatgttgagtgtttaacgtctctc 6047821  T
Q  161 tagacgaacacccctcta 178  Q
    ||||||| |||| |||||    
T  6047820 tagacgaccaccactcta 6047803  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 34255332 - 34255413
Alignment:
Q  91 ctctccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacc 172  Q
    |||||| |||||||| |||||||| ||| ||||| ||||| | | |||||||||| || | ||||||||| |||||||||||    
T  34255332 ctctccggactaaccatgagtattcttaccaccacctctccaggctgatgttgagtgtttaacgtctctccagacgaacacc 34255413  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 24570512 - 24570463
Alignment:
Q  126 ctctctaagatgatgttgagggtatgacgtctctctagacgaacacccct 175  Q
    |||| |||| |||||||||| || |||||||||||| |||||||||||||    
T  24570512 ctctttaagttgatgttgagtgtttgacgtctctcttgacgaacacccct 24570463  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 20044039 - 20043958
Alignment:
Q  91 ctctccagactaaccctgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacc 172  Q
    ||||||||||| | | |||||||| ||| ||||| ||||| |||||||||||||| || | ||||||||| |||||| ||||    
T  20044039 ctctccagactgatcatgagtattcttaccaccacctctccaagatgatgttgagtgtttaacgtctctccagacgaccacc 20043958  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 34571424 - 34571512
Alignment:
Q  91 ctctccagactaaccc-tgagtattattagcaccatctctctaagatgatgttgagggtatgacgtctctctagacgaacacccctcta 178  Q
    |||||||||||||||  |||||||| ||  ||||| ||||| | | |||||||||| || | ||||||||||||||||||||| |||||    
T  34571424 ctctccagactaaccaatgagtattcttcacaccacctctccaggctgatgttgagtgtttaacgtctctctagacgaacaccactcta 34571512  T

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