View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1701-Insertion-8 (Length: 407)

Name: NF1701-Insertion-8
Description: NF1701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1701-Insertion-8
NF1701-Insertion-8
[»] chr5 (1 HSPs)
chr5 (10-407)||(2138041-2138419)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 2138041 - 2138419
Alignment:
Q  10 atcaagatgattcctacatttatataaattttatttaataaaagagtaaatgttnnnnnnntattgaaatgagacttgtcttaatatcttaatactccta 109  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  2138041 atcaagatgattcttacatttatgtaaattttatttaataaaagagtaa------------tattgaaatgagacttgtcttaatatcttaatactccta 2138128  T
Q  110 aaaaataatatatgacttgaaaagggaaaagagatcgaaatagaaaactaaaccgacatagagccttgattttaatatgtgcatatgatgtagtaatata 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2138129 aaaaataatatatgacttgaaaagggaaaagagatcgaaatagaaaactaaaccgacatagagccttgattttaatttgtgcatatgatgtagtaatata 2138228  T
Q  210 gaggataatatcaatatccacaaacttgtcttacctcactaagatgaactgattgtgcttgcgtgagggaacaggctttgatcttcaaagaaaataacaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2138229 gaggataatatcaatatccacaaacttgtcttacctcactaagatgaactgattgtgcttgcgtgagggaacaggctttgatcttcaaagaaaataacaa 2138328  T
Q  310 ctacaccaccgtccattcccttctggaattgcgcttggattttcatagctttaattaattaattaactaaccacctctttgatcaagtcttcatatca 407  Q
    |||||||||||||||||||||||||||| ||| ||||||||  |       ||||||||||||||||||||||||||||| |||||||||||||||||    
T  2138329 ctacaccaccgtccattcccttctggaactgcacttggattaac-------taattaattaattaactaaccacctctttaatcaagtcttcatatca 2138419  T

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