View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_high_1 (Length: 900)
Name: NF17010_high_1
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 12 - 876
Target Start/End: Complemental strand, 39815849 - 39814969
Alignment:
| Q |
12 |
aagcataggatatggcacgccacgtgtgtagagtaatgctcaagttcacacgggtttagctgaataacgtcaagcatggtacaatctttttaggtctaga |
111 |
Q |
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| T |
39815849 |
aagcataggatatggcacgccacgtgtgtagagtaatgctcaagttcacacgggtttagctgaataacgtcaagcatggtacaatctttttaggtctaga |
39815750 |
T |
|
| Q |
112 |
tcgtatctaataggacttaggctctgaaacaattgtttataaacaccagttgtaaatttcattttaagcataatcaatcaaacaacaaaatttcctcaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815749 |
tcgtatctaataggacttaggctctgaaacaattgtttataaacaccagttgtaaatttcattttaagcataatcaatcaaacaacaaaatttcctcaca |
39815650 |
T |
|
| Q |
212 |
tttgatctatattttttccttctagtttttacttaagattttagttctccnnnnnnnnnnggtcacatttaacattctctcgataaactctcgcaagtga |
311 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
39815649 |
tttgatctatattttttccttctagtttttacttaagattttagttctctttttttttttggtcacatttaacattctctagataaactctcgcaagtga |
39815550 |
T |
|
| Q |
312 |
aggacaatagttcattcctcaaggtaatcacgttgagaacaaataaaatcactattgagg----------------ttgctcaaaaaagttagttcattc |
395 |
Q |
| |
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| T |
39815549 |
aggacaatagttcattcctcaaggtaatcacgttgagaacaaataaaatcactattgaggacttaataaaatgagattgctcaaaaaagttagttcattc |
39815450 |
T |
|
| Q |
396 |
ctctagttcttgacgatttagttgaatactccattaacttttaagttcgacaacaaattctagttataaaaaatcctttgtcacgcttatcatttctcat |
495 |
Q |
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| T |
39815449 |
ctctagttcttaacgttttagttgaatactccattaacttttaagttcgacaacaaattctagttataaaaaatcctttgtcatgcttatcatttctcat |
39815350 |
T |
|
| Q |
496 |
ttatattttccttcatcaagtttttatcatttgttctcttgcccgactggattcaccattgataacaactccatgccagaagctttagaactaccctgcg |
595 |
Q |
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| T |
39815349 |
ttatattttccttcatcaagtttttatcatttgttctcttgcccgactggattcaccattgataacaactccatgccagaagctttagaactaccctgcg |
39815250 |
T |
|
| Q |
596 |
ggctatggtacacttgaaaggtccatctggaggtcgccatctatactaatctatcctggtcttcgcctacttgaatgtatggttaaattcaccatccttt |
695 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815249 |
ggctatggtacacttgaaaggtccatctggaggtcgccatctatactaatctatcctggtcttcgcctacttgaatgtatggttaaattcaccatccttt |
39815150 |
T |
|
| Q |
696 |
gtacataaatcaattatgttagtttttaaaaaataaattgattgttaatgttatgcatgattagtcatcaatccaattgtgccccggtcaagtcattatt |
795 |
Q |
| |
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| T |
39815149 |
gtacataaatcaattatgttagtttttaaaaaataaattgattgttaatgttatgcatgattggtcatcaatccaattgtgccccggtcaagtcattatt |
39815050 |
T |
|
| Q |
796 |
tctatattaagctttctatattaagctaaactttggctggtccacatatgaagaagcttcttgttacagttactaacaaca |
876 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39815049 |
tctatattaagctttctatattaagctaaactttggctggtccacatatgaagaagcttcttgttacagttactaacaaca |
39814969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 414 - 613
Target Start/End: Complemental strand, 39812918 - 39812715
Alignment:
| Q |
414 |
tagttgaatactccattaacttttaagttcgacaacaaattctagttataaaaaatcctttgtcacgcttatcatttctcatttatattttccttcatca |
513 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||||||||| ||||||||||||| |
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| T |
39812918 |
tagttgaatactcgagtaacttttaagttcgacaacaaattctagtgctcaaaaatcctttctcgcgcttatcatttctcatttatcttttccttcatca |
39812819 |
T |
|
| Q |
514 |
agtttttatcatttgttctcttgcccgactggattcaccattgataacaactccatgccagaagctt----tagaactaccctgcgggctatggtacact |
609 |
Q |
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| T |
39812818 |
agtttttatcatttgttcttttgcccagctagattcaccattgataacaactccataccagaagcctctccaagaactaccctacgggctatggtacact |
39812719 |
T |
|
| Q |
610 |
tgaa |
613 |
Q |
| |
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|||| |
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|
| T |
39812718 |
tgaa |
39812715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 137 - 370
Target Start/End: Complemental strand, 39813161 - 39812925
Alignment:
| Q |
137 |
gaaacaattgtttataaacaccagttgtaaatttcattttaagcataatcaatcaaacaacaaaatttcctcacatttgatctatattttttccttctag |
236 |
Q |
| |
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|||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813161 |
gaaacacttgtctataaacaccacttgtaaatttcattttaaacataatcaatcaaacaacaaaatttcctcacatttgatctatattttttccttctag |
39813062 |
T |
|
| Q |
237 |
ttttta----cttaagattttagttctccnnnnnnnnnnggtcacatttaacattctctcgataaactctcgcaagtgaaggacaatagttcattcctca |
332 |
Q |
| |
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|||||| ||||| || ||||||||| ||||||||||||||||||| || |||||||| ||| ||||||||||| ||||| ||||| |
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| T |
39813061 |
tttttactttcttaatatattagttctcaattttatttttgtcacatttaacattctctagagaaactctcacaaatgaaggacaat-tttcatacctca |
39812963 |
T |
|
| Q |
333 |
aggtaatcacgttgagaacaaataaaatcactattgag |
370 |
Q |
| |
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| | |||||||||||||||||||||||||| ||||||| |
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| T |
39812962 |
atgcaatcacgttgagaacaaataaaatcattattgag |
39812925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 729 - 806
Target Start/End: Complemental strand, 39812711 - 39812634
Alignment:
| Q |
729 |
taaattgattgttaatgttatgcatgattagtcatcaatccaattgtgccccggtcaagtcattatttctatattaag |
806 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||| |||||||| ||| |||||||||||||||||| |||||| |
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| T |
39812711 |
taaattgattgttaatgttatgcattattggtcatcaattcaattgtgtcccagtcaagtcattatttctacattaag |
39812634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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