View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_high_12 (Length: 252)
Name: NF17010_high_12
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 31944749 - 31944903
Alignment:
| Q |
18 |
accttggagtttggttggataacggcggtatggtccttgtaggtagcatttccatatggtgaacactctgatacctcagagtttgtgtgccccaagacac |
117 |
Q |
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| T |
31944749 |
accttggagtttggttggataccggcggtatggtccttgtaggtagcatttccatatggtgaacactctgttacctcagagtttgtgtgccccgagacac |
31944848 |
T |
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| Q |
118 |
tagttaagaaaaccaacatagaatgattgtattggaaattgtggaaatatgagta |
172 |
Q |
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| T |
31944849 |
tagttaagaaaaccaacataaaatgattgtattggaaattgtggaaatatgagta |
31944903 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 31776098 - 31776046
Alignment:
| Q |
112 |
agacactagttaagaaaaccaacatagaatgattgtattggaaattgtggaaa |
164 |
Q |
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| T |
31776098 |
agacactagttaagaaaactaatatagaaagattgtattgaaaattgtagaaa |
31776046 |
T |
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