View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_high_13 (Length: 220)
Name: NF17010_high_13
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 37942172 - 37942054
Alignment:
| Q |
15 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaagccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
114 |
Q |
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| T |
37942172 |
cacagaccttgatactatctggtccaaaccagttagatccgaaccaaacaaaaccgatcttaacaacttgttacctatttcttcatcgtcttcactacta |
37942073 |
T |
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| Q |
115 |
cagaaccaaatcatgaatc |
133 |
Q |
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| T |
37942072 |
cagaaccaaatcatgaatc |
37942054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 37942039 - 37942000
Alignment:
| Q |
163 |
gcttcttttcagcttgcaacaaattttcacaccatgaatg |
202 |
Q |
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| T |
37942039 |
gcttcttttcagcttgcaacaaattttcacaccatgaatg |
37942000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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