View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17010_high_2 (Length: 738)

Name: NF17010_high_2
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17010_high_2
NF17010_high_2
[»] chr3 (1 HSPs)
chr3 (12-721)||(2521924-2522633)


Alignment Details
Target: chr3 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 12 - 721
Target Start/End: Original strand, 2521924 - 2522633
Alignment:
Q  12 atcatcaggttcgtgttttctaatgagtgtgattatttctacaaactagaatttataaggtgttgcattattctttcatatttttataattcaaaacgag 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2521924 atcatcaggttcgtgttttctaacgagtgtgattatttctacaaactagaatttataaggtgttgcattattctttcatatttttataattcaaaacgag 2522023  T
Q  112 taaatgttttctccctcgccttctaatgattcgtcacgttgtttcactctatagtgagttgcttaaagacttccaaacaacttcaggagtaaagcctcaa 211  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2522024 taaatgttttctccctcaccttctaatgattcgtcacgttgtttcactctatagtgagttgcttaaagacttccaaacaacttcaggagtaaagcctcaa 2522123  T
Q  212 caaattataattttcaggtctgtttacaaggcaatttcgatgaatttggtaaaatagaaaaaggtcattgaatttccatggtttgttagggacggcgtga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2522124 caaattataattttcaggtctgtttacaaggcaatttcgatgaatttggtaaaatagaaaaaggtcattgaatttccatggtttgttagggacggcgtga 2522223  T
Q  312 gcgaatcacagttcaaccaagtcctcaacattgaattgaatgaaatcataaaggtatatatatgttcaacaatgtaaattttaagtctgaatattgaaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2522224 gcgaatcacagttcaaccaagtcctcaacattgaattgaatgaaatcataaaggtatatatatgttcaacaatgtaaattttaagtctgaatattgaaat 2522323  T
Q  412 tacatgatgaattttattgaaattttatttgcaggcatgtaagcattatgatgaaagttggtgtccaaaatttactttgattgttgctcagaagaatcat 511  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2522324 tacattatgaattttattgaaattttatttgcaggcatgtaagtgttatgatgaaagttggtgtccaaagtttactttgattgttgctcagaagaatcat 2522423  T
Q  512 cacactaggttcttcaaagccaatgctcctcaagaaaatgtttcacctggtttgtcatttgaacagaaaatattaagtaaatattagaattggcttatta 611  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2522424 cacactaggttcttcaaagccaattctcctcaagaaaatgtttcacctggtttgtcatttgaacagaaaatattaagtaaatattagaattggcttatta 2522523  T
Q  612 ttataatcttttatttgtttatgcgtaggaactgttattgataacactatatgtcatcccaaaaacaatgacttctacatgtgtgtacatgctgggagga 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  2522524 ttataatcttttatttgtttatgcgtaggaactgttattgataacactatatgtcatcccaaagacaatgacttctacatgtgtgcacatgctgggagga 2522623  T
Q  712 ttgtaagtat 721  Q
    ||||||||||    
T  2522624 ttgtaagtat 2522633  T

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