View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17010_low_10 (Length: 382)

Name: NF17010_low_10
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17010_low_10
NF17010_low_10
[»] chr8 (4 HSPs)
chr8 (40-382)||(2792368-2792710)
chr8 (124-362)||(44164761-44164997)
chr8 (160-362)||(17724434-17724628)
chr8 (57-107)||(33819687-33819737)
[»] chr3 (7 HSPs)
chr3 (124-332)||(30694341-30694549)
chr3 (152-362)||(33813073-33813283)
chr3 (152-332)||(46589584-46589764)
chr3 (304-369)||(45730497-45730562)
chr3 (125-322)||(45730303-45730493)
chr3 (51-107)||(5499427-5499483)
chr3 (40-107)||(9557320-9557387)
[»] chr1 (7 HSPs)
chr1 (152-382)||(10484607-10484836)
chr1 (124-332)||(27023963-27024171)
chr1 (289-369)||(19251511-19251591)
chr1 (40-107)||(51814494-51814561)
chr1 (50-108)||(14787355-14787413)
chr1 (193-287)||(19251402-19251495)
chr1 (51-107)||(34460929-34460985)
[»] chr5 (4 HSPs)
chr5 (154-362)||(5585834-5586042)
chr5 (223-325)||(11141171-11141273)
chr5 (228-382)||(25086112-25086273)
chr5 (228-382)||(25144082-25144243)
[»] scaffold0161 (2 HSPs)
scaffold0161 (115-369)||(26802-27067)
scaffold0161 (154-228)||(7764-7839)
[»] chr2 (13 HSPs)
chr2 (123-362)||(11502532-11502764)
chr2 (159-382)||(17909641-17909867)
chr2 (158-369)||(6095904-6096115)
chr2 (154-369)||(8207471-8207679)
chr2 (152-255)||(41075131-41075235)
chr2 (40-107)||(45672387-45672454)
chr2 (50-108)||(4438998-4439056)
chr2 (154-211)||(15253337-15253395)
chr2 (50-107)||(11738063-11738120)
chr2 (40-107)||(34041597-34041664)
chr2 (40-107)||(35916086-35916153)
chr2 (40-107)||(45672238-45672305)
chr2 (54-108)||(5147702-5147756)
[»] chr7 (2 HSPs)
chr7 (122-325)||(37381724-37381928)
chr7 (152-203)||(10024008-10024060)
[»] chr4 (7 HSPs)
chr4 (174-362)||(22209545-22209733)
chr4 (154-330)||(42935761-42935934)
chr4 (156-332)||(8191806-8191982)
chr4 (223-325)||(54421200-54421302)
chr4 (40-108)||(46545710-46545778)
chr4 (189-270)||(19878503-19878584)
chr4 (40-108)||(47044716-47044784)
[»] chr6 (3 HSPs)
chr6 (190-322)||(19403527-19403657)
chr6 (129-322)||(15107386-15107579)
chr6 (223-369)||(3622094-3622240)
[»] scaffold0105 (1 HSPs)
scaffold0105 (156-332)||(18381-18557)
[»] scaffold0118 (1 HSPs)
scaffold0118 (40-108)||(41642-41710)
[»] scaffold0013 (1 HSPs)
scaffold0013 (189-369)||(44342-44520)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 40 - 382
Target Start/End: Complemental strand, 2792710 - 2792368
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggttagcaagcttttattataactagactctaagcc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  2792710 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtggattagcaagcttttattataactagactctaaccc 2792611  T
Q  140 gtgtgatgcgctggttttgtagagtttcatatataagtattaaagtggcatattattacttttagagttacaattaagctcgtagaaacaatcaaattaa 239  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2792610 gtgttatgcgctggttttgtagagtttcatatataagtattaaagtggcatattattacttttagagttacaattaagctcgtagaaacaatcaaactaa 2792511  T
Q  240 atggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaat 339  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2792510 atgatgattgagagtgatcgacatacacaatatcaaaaaagcaaattaaaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaat 2792411  T
Q  340 taaatttagtggaagtaatcaaaggtggaatcaacaaaataaa 382  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2792410 taaatttagtggaagtaatcaaaggtggaatcaacaaaataaa 2792368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 362
Target Start/End: Complemental strand, 44164997 - 44164761
Alignment:
Q  124 aactagactctaagccgtgtgatgcgctggttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgt 222  Q
    ||||||||||||| |||| |||||  |  ||||||||||||||||||| | | | | |||||||| ||||||||| ||||||||||||| ||||  || |    
T  44164997 aactagactctaacccgtatgatgtacgagttttgtagagtttcatatgttatt-tcaaagtggctatattattaattttagagttacacttaaagtcat 44164899  T
Q  223 agaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatg 322  Q
    ||||||||||||| ||  || |||||||||||| ||||||| || ||| ||||||||  |||||| ||||| | || ||||||||| |||||||||||||    
T  44164898 agaaacaatcaaactatgtgatgattgagagtggtcgacatgcaaaatctcaaaaaa-aaaattaaaaaca-tcagtttgcatcaacaaaaatgaatatg 44164801  T
Q  323 gaatcaaagttgtaaattaaatttagtggaagtaatcaaa 362  Q
    ||||||||||  |||||||||||  ||| || ||||||||    
T  44164800 gaatcaaagtcataaattaaattatgtgaaaataatcaaa 44164761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 362
Target Start/End: Original strand, 17724434 - 17724628
Alignment:
Q  160 agagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgatc 258  Q
    |||||||||||||||||||| ||| || | ||||||||| ||||||||| ||| | ||  || |||||||||||||| ||| || |||||||||||| |     
T  17724434 agagtttcatatataagtataaaactgactatattattaattttagagtcacattcaaagtcatagaaacaatcaaactaagtgatgattgagagtggta 17724533  T
Q  259 gacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagtaat 358  Q
    ||||| || ||| |||||||||||||| |          | ||||||||| ||||||||||||||||| |||||  |||||||||||  ||| |||||||    
T  17724534 gacatgcaaaatttcaaaaaagcaaatga---------tgtttgcatcaacaaaaatgaatatggaattaaagtcataaattaaattatgtgaaagtaat 17724624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 33819737 - 33819687
Alignment:
Q  57 aacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    |||| ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  33819737 aacacactctcagatcccaagtcaataccattaggtcaacttaagtgggtt 33819687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 124 - 332
Target Start/End: Original strand, 30694341 - 30694549
Alignment:
Q  124 aactagactctaagccgtgtgatgcgctggttttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagctcg 221  Q
    ||||||||||||| ||||| ||||| | ||||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||| |||| |||     
T  30694341 aactagactctaacccgtgcgatgcacgggttttgtagagtttcatatataaaatatcaaattggctatattattacttgtagagttacatttaaactc- 30694439  T
Q  222 tagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatat 321  Q
     ||||||| ||||| ||| ||   ||||| ||||||||||||||||||| ||||| ||||||||||  ||||||||| ||||||||||||||||||||||    
T  30694440 -agaaacattcaaagtaagtgacaattgaaagtgatcgacatacacaatctcaaagaagcaaattaacaacatttagtttgcatcaataaaaatgaatat 30694538  T
Q  322 ggaatcaaagt 332  Q
    |||||||||||    
T  30694539 ggaatcaaagt 30694549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 33813073 - 33813283
Alignment:
Q  152 ggttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattga 250  Q
    ||||||||||||||| || | |||||||||||||||| ||||||||| ||||||||||||| ||||  || |||||||||||||| ||| |  |||||||    
T  33813073 ggttttgtagagttttatctgtaagtattaaagtggctatattattaattttagagttacatttaaagtcatagaaacaatcaaactaagtaatgattga 33813172  T
Q  251 gagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtg 350  Q
    || || ||||||| || ||| |||| |||  |||||| ||| ||| || ||| ||||| |||||||||||||||||||||||  |||||||||||| |||    
T  33813173 gaatggtcgacatgcaaaatctcaacaaaataaattaaaaatatt-agtttgtatcaacaaaaatgaatatggaatcaaagtcataaattaaattttgtg 33813271  T
Q  351 gaagtaatcaaa 362  Q
     |||||||||||    
T  33813272 aaagtaatcaaa 33813283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 332
Target Start/End: Original strand, 46589584 - 46589764
Alignment:
Q  152 ggttttgtagagtttcatatataagt-attaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattg 249  Q
    ||||||||| |||||||||||||| | || ||| |||| ||||||||| || |||||||||  |||| |||  ||||||||||||||||| ||   ||||    
T  46589584 ggttttgtacagtttcatatataaattatcaaattggctatattattatttgtagagttacgtttaaactc--agaaacaatcaaattaagtgacaattg 46589681  T
Q  250 agagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagt 332  Q
    | | |||||||||| |||||| ||||| ||||||||||| ||||||||  ||||||||| ||||||||||||| |||||||||    
T  46589682 aaattgatcgacatgcacaatctcaaagaagcaaattagcaacatttaatttgcatcaacaaaaatgaatatgaaatcaaagt 46589764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 45730497 - 45730562
Alignment:
Q  304 atcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtggaa 369  Q
    ||||| |||||| |||||||||||||| |  ||||||||||||||||||| ||||||||| |||||    
T  45730497 atcaacaaaaataaatatggaatcaaaatcataaattaaatttagtggaactaatcaaagctggaa 45730562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 322
Target Start/End: Original strand, 45730303 - 45730493
Alignment:
Q  125 actagactctaagccgtgtgatgcgctggttttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagctcgt 222  Q
    |||| ||||||| ||||  ||||||| ||||||||||||||||||||||||  ||||||| ||   ||||||||| || |||||||||| ||||          
T  45730303 actatactctaacccgttcgatgcgcgggttttgtagagtttcatatataaaatattaaattgattatattattatttgtagagttacatttaa------ 45730396  T
Q  223 agaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatg 322  Q
       |||||||||| ||   |  |||||||||||||||| || |||||| ||||| ||||||||||   |||||||  || |||||| |||||||||||||    
T  45730397 ---aacaatcaaactaggcgacgattgagagtgatcgatatgcacaatctcaaagaagcaaattaaccacatttaatttacatcaacaaaaatgaatatg 45730493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 5499427 - 5499483
Alignment:
Q  51 aggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    ||||||| || |||||||||||||||||||| ||||  |||||||| ||||||||||    
T  5499427 aggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtt 5499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 9557387 - 9557320
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    ||||||||| |||||||| || ||||||||||| |||| ||| || || |||||| ||||||||||||    
T  9557387 ctgagatctcgaggaggagcacactctcagatcccaagccaatactatcaggccagctcaagtgggtt 9557320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 152 - 382
Target Start/End: Complemental strand, 10484836 - 10484607
Alignment:
Q  152 ggttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattga 250  Q
    |||||||||||||||||||||||||||| ||| || | ||||||||| ||||| ||||||| |  |  || |||||||||||||| |||||  |||||||    
T  10484836 ggttttgtagagtttcatatataagtatcaaactgactatattattaattttatagttacattcgaagtcatagaaacaatcaaactaaata-tgattga 10484738  T
Q  251 gagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtg 350  Q
    ||||| || ||||||| ||| ||||||||| ||||||||||||||  | ||||||||| ||||||||||||||||||||| |  |||||||||||  |||    
T  10484737 gagtg-tcaacatacaaaatctcaaaaaagaaaattagaaacattctgtttgcatcaacaaaaatgaatatggaatcaaactcataaattaaattatgtg 10484639  T
Q  351 gaagtaatcaaaggtggaatcaacaaaataaa 382  Q
     ||||||||||| ||||||  |||| ||||||    
T  10484638 aaagtaatcaaacgtggaaataacacaataaa 10484607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 332
Target Start/End: Original strand, 27023963 - 27024171
Alignment:
Q  124 aactagactctaagccgtgtgatgcgctggttttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagctcg 221  Q
    ||||||||| ||| || || ||||| | ||||||| ||||||||||||||||  ||| ||| |||| |||||||||| | |||||||||| |||| |||     
T  27023963 aactagactttaacccttgcgatgcacgggttttggagagtttcatatataaaatatcaaattggctatattattacgtgtagagttacatttaaactc- 27024061  T
Q  222 tagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatat 321  Q
     | ||||||||||| ||| ||   ||||| |||||||||||| |||||| ||||| ||||||||||  ||||||||| |||||| || ||||||||||||    
T  27024062 -aaaaacaatcaaactaagtgacaattgaaagtgatcgacatgcacaatctcaaagaagcaaattaacaacatttagtttgcataaacaaaaatgaatat 27024160  T
Q  322 ggaatcaaagt 332  Q
    |||||||||||    
T  27024161 ggaatcaaagt 27024171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 19251511 - 19251591
Alignment:
Q  289 aaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtggaa 369  Q
    |||||||| | ||||||||| ||||||||||||||||||||| || |||| ||||||  ||| ||||||||||| ||||||    
T  19251511 aaacattttgtttgcatcaacaaaaatgaatatggaatcaaacttataaactaaattctgtgaaagtaatcaaatgtggaa 19251591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 51814561 - 51814494
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    |||||| || |||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||||    
T  51814561 ctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 14787355 - 14787413
Alignment:
Q  50 gaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtta 108  Q
    |||||| |||| |||||||| ||||||||||| |||| |||| ||||||||||| ||||    
T  14787355 gaggagaaacacactctcaggtctcaagtcaataccactaggtcaactcaagtgagtta 14787413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 19251402 - 19251495
Alignment:
Q  193 tattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaatta 287  Q
    ||||| ||||||||||||| | ||  || |||||||||||||| ||| || |||||||||||| ||||||| || ||| | ||||||| ||||||    
T  19251402 tattaattttagagttacattcaaagtcatagaaacaatcaaactaagtgatgattgagagtg-tcgacatgcaaaatcttaaaaaagaaaatta 19251495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 34460929 - 34460985
Alignment:
Q  51 aggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    |||||||||| ||| | || ||||||||||| |||| || |||||||||||||||||    
T  34460929 aggaggaacacacttttaggtctcaagtcaataccactaagccaactcaagtgggtt 34460985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 362
Target Start/End: Original strand, 5585834 - 5586042
Alignment:
Q  154 ttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgaga 252  Q
    |||||||||||||||||||||||||||||| |  | ||||||||| |||||||||||||   ||  || ||| |||||||||| ||| || |||||||||    
T  5585834 ttttgtagagtttcatatataagtattaaactaactatattattaattttagagttacatccaaagtcatagtaacaatcaaactaagtgatgattgaga 5585933  T
Q  253 gtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtgga 352  Q
    || ||| ||||||| ||| ||||||||| ||||||||||||||| | ||||||||| |||||||||||| |||||||| |  |||| ||||||  ||| |    
T  5585934 gt-atcaacatacaaaatctcaaaaaagaaaattagaaacattttgtttgcatcaacaaaaatgaatatagaatcaaactcataaactaaattctgtgaa 5586032  T
Q  353 agtaatcaaa 362  Q
    ||||||||||    
T  5586033 agtaatcaaa 5586042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 11141273 - 11141171
Alignment:
Q  223 agaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatg 322  Q
    ||||||||||||||||| ||   |||||||||||||||||| |||||| ||| | ||| ||||||  ||||||||| ||||||||| |||||||||||||    
T  11141273 agaaacaatcaaattaagtgacaattgagagtgatcgacatgcacaatttcatagaagtaaattaacaacatttagtttgcatcaacaaaaatgaatatg 11141174  T
Q  323 gaa 325  Q
    |||    
T  11141173 gaa 11141171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 382
Target Start/End: Complemental strand, 25086273 - 25086112
Alignment:
Q  228 caatcaaattaaatggtgattgagagtgatcgacatacacaatatc-aaaaaagcaaattaga-----aacatttagcttgcatcaataaaaatgaatat 321  Q
    |||||||| |||||| |||||||||||||||||||| |||||| || ||||||||| || |||     |||| | |  ||||||||| ||||||||||||    
T  25086273 caatcaaactaaatgatgattgagagtgatcgacatgcacaatctcaaaaaaagcagatcagatcaacaacactcaatttgcatcaacaaaaatgaatat 25086174  T
Q  322 ggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtgg-aatcaacaaaataaa 382  Q
    |||| ||| ||  | ||||||||| |||||||| ||| || ||||| |||||||| ||||||    
T  25086173 ggaaacaacgtcatgaattaaattcagtggaagcaatgaagggtggaaatcaacacaataaa 25086112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 382
Target Start/End: Complemental strand, 25144243 - 25144082
Alignment:
Q  228 caatcaaattaaatggtgattgagagtgatcgacatacacaatatc-aaaaaagcaaattaga-----aacatttagcttgcatcaataaaaatgaatat 321  Q
    |||||||| |||||| |||||||||||||||||||| |||||| || ||||||||| || |||     |||| | |  ||||||||| ||||||||||||    
T  25144243 caatcaaactaaatgatgattgagagtgatcgacatgcacaatctcaaaaaaagcagatcagatcaacaacactcaatttgcatcaacaaaaatgaatat 25144144  T
Q  322 ggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtgg-aatcaacaaaataaa 382  Q
    |||| ||| ||  | ||||||||| |||||||| ||| || ||||| |||||||| ||||||    
T  25144143 ggaaacaacgtcatgaattaaattcagtggaagcaatgaagggtggaaatcaacacaataaa 25144082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 115 - 369
Target Start/End: Original strand, 26802 - 27067
Alignment:
Q  115 ttttattataactagactctaagccgtgtgatgcgctggttttgtagagtttcatatataagtattaaagtgg-catattattacttttagagttacaat 213  Q
    ||||| |||||||||||||||| || |||||| | | | ||||| |||||||||||||||||||||||| |||  |||||||||||||||| |||| | |    
T  26802 ttttaatataactagactctaatccatgtgatacacggattttgcagagtttcatatataagtattaaattggttatattattacttttagtgttatatt 26901  T
Q  214 taagctcgtagaaacaatcaaattaaatg----------gtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgc 303  Q
    ||| ||| ||||||| |||||| ||  ||          ||||||||||||||||||||| |||||| | ||| |  ||||||||||||||| || || |    
T  26902 taaactcatagaaacgatcaaactaggtgatgattgagagtgattgagagtgatcgacatgcacaatcttaaagagacaaattagaaacattcagtttac 27001  T
Q  304 atcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtggaa 369  Q
    || || ||||||||||||| ||||| | |  | ||||||||||||||||| |||||||||||||||    
T  27002 attaacaaaaatgaatatgaaatcataatcattaattaaatttagtggaaataatcaaaggtggaa 27067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 7764 - 7839
Alignment:
Q  154 ttttgtagagtttcatatataagtattaaagtgg-catattattacttttagagttacaattaagctcgtagaaac 228  Q
    ||||||||| |||||||||||||||||||| |||  |||||||||||||||| |||| | |||| ||| |||||||    
T  7764 ttttgtagaatttcatatataagtattaaattggttatattattacttttagggttatatttaaactcatagaaac 7839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 123 - 362
Target Start/End: Complemental strand, 11502764 - 11502532
Alignment:
Q  123 taactagactctaagccgtgtgatgcgctggttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcg 221  Q
    |||||||||||||| ||||   |||  | ||||| |||||||||||||||||||||| |||||||| | ||||||| ||||||||||||| | ||  ||     
T  11502764 taactagactctaacccgtactatgtacgggtttcgtagagtttcatatataagtatcaaagtggctacattattaattttagagttacattcaaagtca 11502665  T
Q  222 tagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatat 321  Q
    |||||||||||||| ||  || |||||||||| |       | || ||| |||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  11502664 tagaaacaatcaaactatgtgatgattgagaggg-------tgcaaaatctcaaaaaagcaaattagaaacatt-agtttgcatcaacaaaaatgaatat 11502573  T
Q  322 ggaatcaaagttgtaaattaaatttagtggaagtaatcaaa 362  Q
    |||||||||||  |||||||||||  ||| |||||||||||    
T  11502572 ggaatcaaagtcataaattaaattatgtgaaagtaatcaaa 11502532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 159 - 382
Target Start/End: Complemental strand, 17909867 - 17909641
Alignment:
Q  159 tagagtttcatatataagtattaaagtggca-tattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgat 257  Q
    |||| |||||||||||||||||||| |||   |||||||||||||||||||||| | || ||| || ||||||| ||| ||| || ||||| ||||||||    
T  17909867 tagattttcatatataagtattaaattggttgtattattacttttagagttacattcaaactcataaaaacaattaaactaagtgatgattaagagtgat 17909768  T
Q  258 cgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatgg-aatcaaagttgtaaattaaatttagtggaagta 356  Q
    ||| ||  ||||  ||||||||||| || || || ||| |  ||||||||| |||||||||||||| |||||||||  ||||||||||| |||| |||||    
T  17909767 cgatatgaacaacctcaaaaaagcagatgagcaatattcaatttgcatcaacaaaaatgaatatggaaatcaaagtcataaattaaattcagtgaaagta 17909668  T
Q  357 atcaaaggtg-gaatcaacaaaataaa 382  Q
    || |||||||  |||||||| ||||||    
T  17909667 atgaaaggtgaaaatcaacacaataaa 17909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 369
Target Start/End: Complemental strand, 6096115 - 6095904
Alignment:
Q  158 gtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtga 256  Q
    ||||| |||||||||||||||| ||| || | ||||||||| ||||||||||||| | ||  || | |||| ||||||| ||| || ||||||||||| |    
T  6096115 gtagattttcatatataagtatgaaaatgactatattattaattttagagttacattcaaagtcatggaaataatcaaactaagtgatgattgagagt-a 6096017  T
Q  257 tcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagta 356  Q
    | ||||| || ||| ||||||||| || ||| |||||||    ||||||||| |||||| |||||||||||||| |  |||| ||||||  ||| |||||    
T  6096016 ttgacatgcaaaatctcaaaaaagaaagttaaaaacattctctttgcatcaacaaaaataaatatggaatcaaactcataaactaaattatgtgaaagta 6095917  T
Q  357 atcaaaggtggaa 369  Q
    |||||| ||||||    
T  6095916 atcaaacgtggaa 6095904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 154 - 369
Target Start/End: Original strand, 8207471 - 8207679
Alignment:
Q  154 ttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgaga 252  Q
    ||||||| |||||||||||||||||| ||| ||   ||||||||| |||||||||||    |||| || |||| ||||||||||||| |  |||||||||    
T  8207471 ttttgtaaagtttcatatataagtatcaaactgattatattattaattttagagtta----taag-tcatagacacaatcaaattaagta-tgattgaga 8207564  T
Q  253 gtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtgga 352  Q
    |||  | ||||||| ||| ||||||||| ||||||||||||||| | |||||| || ||||||| ||||| || |||| |  |||| ||||||  ||| |    
T  8207565 gtgc-caacatacaaaatctcaaaaaagaaaattagaaacattttgtttgcat-aaaaaaaatgcatatgaaaccaaactcataaactaaattatgtgaa 8207662  T
Q  353 agtaatcaaaggtggaa 369  Q
    |||||||||| ||||||    
T  8207663 agtaatcaaacgtggaa 8207679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 41075131 - 41075235
Alignment:
Q  152 ggttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattga 250  Q
    ||||||||||| |||||||||||||||| ||| || | |||||||||  |||||||||||| | ||  || |||||||||||||| ||| || |||||||    
T  41075131 ggttttgtagaatttcatatataagtatcaaactgactatattattaactttagagttacattcaaagtcatagaaacaatcaaactaagtgatgattga 41075230  T
Q  251 gagtg 255  Q
    |||||    
T  41075231 gagtg 41075235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 45672387 - 45672454
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    |||||| |||||||||||||||||||  || ||||||| ||||||||  |||||||| ||||||||||    
T  45672387 ctgagacctagaggaggaacatactccaaggtctcaaggcaaaaccacaaggccaacccaagtgggtt 45672454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 4438998 - 4439056
Alignment:
Q  50 gaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtta 108  Q
    |||||||| || ||||||||||| ||||| || |||||||||||||| |||||||||||    
T  4438998 gaggaggagcacactctcagatcccaagttaataccattaggccaacccaagtgggtta 4439056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 15253337 - 15253395
Alignment:
Q  154 ttttgtagagtttcatatataagtattaaagtg-gcatattattacttttagagttaca 211  Q
    |||||||||||||||||||||||||||||| ||  |||||||||| ||||||| |||||    
T  15253337 ttttgtagagtttcatatataagtattaaaatgaccatattattaattttagaattaca 15253395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 11738063 - 11738120
Alignment:
Q  50 gaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    ||||||||||| ||||||||||||| |||||| |||| ||  ||||||||||||||||    
T  11738063 gaggaggaacacactctcagatctctagtcaataccactaatccaactcaagtgggtt 11738120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 34041597 - 34041664
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    |||||| || |||||||| || |||||||||||  ||||||| |||| ||||||||| ||||||||||    
T  34041597 ctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggtt 34041664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 35916153 - 35916086
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    ||||||||| ||||||||||| ||||| | |||||||||||| ||||  || ||||| ||||||||||    
T  35916153 ctgagatcttgaggaggaacacactcttaaatctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 45672238 - 45672305
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtt 107  Q
    |||||| |||||||||||||||||||  || ||||||| ||||||||  |||||||  ||||||||||    
T  45672238 ctgagacctagaggaggaacatactccaaggtctcaaggcaaaaccacaaggccaatccaagtgggtt 45672305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 5147702 - 5147756
Alignment:
Q  54 aggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtta 108  Q
    |||| ||||||| ||||||||||||||| |||| ||| ||||| |||||||||||    
T  5147702 aggagcatactcccagatctcaagtcaataccactagaccaacccaagtgggtta 5147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 325
Target Start/End: Complemental strand, 37381928 - 37381724
Alignment:
Q  122 ataactagactctaagccgtgtgatgcgc-tggttttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagc 218  Q
    ||||||||||||| | ||||| ||||| | || ||||||||||||||||||||||  ||| ||| || | ||||||||| |  |||||||||| |||| |    
T  37381928 ataactagactctgacccgtgcgatgcacgtgtttttgtagagtttcatatataaaatatcaaattgactatattattaatcgtagagttacatttaaac 37381829  T
Q  219 tcgtagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaa 318  Q
    ||  ||||||||||||||||| ||   ||||||||||||||| ||||||||| ||||| ||||||||||  ||||||||| ||||||||| |||||||||    
T  37381828 tc--agaaacaatcaaattaagtgacaattgagagtgatcgatatacacaatctcaaagaagcaaattaacaacatttagtttgcatcaacaaaaatgaa 37381731  T
Q  319 tatggaa 325  Q
    |||||||    
T  37381730 tatggaa 37381724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 10024008 - 10024060
Alignment:
Q  152 ggttttgtagagtttcatatataagtattaaagtggc-atattattactttta 203  Q
    |||||||||||||||||||||||| ||| ||| || | |||||||||||||||    
T  10024008 ggttttgtagagtttcatatataactatgaaattgactatattattactttta 10024060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 362
Target Start/End: Complemental strand, 22209733 - 22209545
Alignment:
Q  174 aagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatat 272  Q
    |||| |||||||||| ||||||||| ||||||||||| | ||||  |  || ||||||||||| ||| || |||||||||||| ||||||| || ||| |    
T  22209733 aagtgttaaagtggctatattattaattttagagttatatttaaagtgataaaaacaatcaaactaagtgatgattgagagtggtcgacatgcaaaatct 22209634  T
Q  273 caaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagtaatcaaa 362  Q
    ||||||||||||||| ||| | |||| ||||||||| |||||||||||| |||||||| |  |||||||||||  ||| |||||||||||    
T  22209633 caaaaaagcaaattaaaaata-ttagtttgcatcaacaaaaatgaatatcgaatcaaattcataaattaaattatgtgaaagtaatcaaa 22209545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 42935934 - 42935761
Alignment:
Q  154 ttttgtagagtttcatatataagtattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgaga 252  Q
    ||||||| |||||||||||||||||| ||| || | ||||||||| ||||||||||| | ||||  || |||| ||||||||||||| |  |||||||||    
T  42935934 ttttgtaaagtttcatatataagtatcaaactgactatattattaattttagagttatatttaaagtcatagacacaatcaaattaagta-tgattgaga 42935836  T
Q  253 gtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaa 330  Q
    |||  | ||||||| ||| ||||||||| ||||||||||||||| | ||||||  | ||||||| |||||||| ||||    
T  42935835 gtgc-caacatacaaaatctcaaaaaagaaaattagaaacattttgtttgcat--aaaaaaatgcatatggaaccaaa 42935761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 332
Target Start/End: Original strand, 8191806 - 8191982
Alignment:
Q  156 ttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagag 253  Q
    |||||||||||||| |||||  ||||||| || | ||||||||| || |||||||||  |||| |||  | ||||||| ||| ||| ||   |||||||     
T  8191806 ttgtagagtttcatgtataaaatattaaattgactatattattatttatagagttacttttaaactc--aaaaacaattaaactaagtgacaattgagaa 8191903  T
Q  254 tgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagt 332  Q
    |||||||||| |||||| | ||| ||| || ||| |||||||||| |||||| || |||||||||||||||||||||||    
T  8191904 tgatcgacatgcacaattttaaagaagaaagttaaaaacatttagtttgcattaacaaaaatgaatatggaatcaaagt 8191982  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 54421302 - 54421200
Alignment:
Q  223 agaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatg 322  Q
    ||||||||||||| ||| ||   ||||||||| |||||||| |||||| ||||| ||||||| ||  ||||||||| || |||||| |||||||||||||    
T  54421302 agaaacaatcaaactaagtgacaattgagagttatcgacatgcacaatctcaaagaagcaaagtaacaacatttagtttacatcaacaaaaatgaatatg 54421203  T
Q  323 gaa 325  Q
    |||    
T  54421202 gaa 54421200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 46545778 - 46545710
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtta 108  Q
    ||||||||| |||||||| || |||||||| ||||||| ||| |||| ||||||||| |||||||||||    
T  46545778 ctgagatcttgaggaggagcacactctcaggtctcaagccaataccactaggccaacccaagtgggtta 46545710  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 19878584 - 19878503
Alignment:
Q  189 atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaat 270  Q
    ||||||||||  ||| ||||||| | || ||| ||||||  |||||| ||| || |||||||||||||||||||| ||||||    
T  19878584 atattattacccttaaagttacattcaaactcatagaaattatcaaactaagtgatgattgagagtgatcgacatgcacaat 19878503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 47044784 - 47044716
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtta 108  Q
    |||||| || |||||||| || ||||||||||| |||||||| ||||  |||||||  |||||||||||    
T  47044784 ctgagacctcgaggaggagcaaactctcagatcccaagtcaataccaccaggccaatccaagtgggtta 47044716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 19403657 - 19403527
Alignment:
Q  190 tattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattaga 289  Q
    |||||||| || |||||||||| |||| |||  ||||||||||||| ||| ||   |||||||||||| ||||| |||||| ||||| ||||||||||      
T  19403657 tattattaattgtagagttacatttaaactc--agaaacaatcaaactaagtgacaattgagagtgattgacatgcacaatctcaaagaagcaaattaac 19403560  T
Q  290 aacatttagcttgcatcaataaaaatgaatatg 322  Q
    ||||||||| | ||||||| |||||| ||||||    
T  19403559 aacatttagttagcatcaacaaaaattaatatg 19403527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 322
Target Start/End: Original strand, 15107386 - 15107579
Alignment:
Q  129 gactctaagccgtgtgatgcgctggttttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagctcgtagaa 226  Q
    |||||||| || || ||||| | | |||| |||||||||||| ||||  ||| ||| |||| ||||||||| |  |||||||||| |||| |||  ||||    
T  15107386 gactctaacccatgagatgcacggattttttagagtttcataaataaaatatcaaattggctatattattaatcgtagagttacatttaaactc--agaa 15107483  T
Q  227 acaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatg 322  Q
    ||||||||| ||| ||   ||||||| |||||||||| |||||| ||||| ||||||||||  |||||||||  |||||||| || ||||||||||    
T  15107484 acaatcaaactaagtgacaattgagaatgatcgacatgcacaatctcaaagaagcaaattaacaacatttagtctgcatcaacaataatgaatatg 15107579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 369
Target Start/End: Complemental strand, 3622240 - 3622094
Alignment:
Q  223 agaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaa-ttagaaacatttagcttgcatcaataaaaatgaatat 321  Q
    ||||||||||||| ||| |  ||||||||||| |||||||| || ||| ||||||||  ||| ||| ||| ||||   ||||||||| |||||| ||||     
T  3622240 agaaacaatcaaactaactaatgattgagagt-atcgacatgcaaaatctcaaaaaaaaaaaattaaaaaaatttcatttgcatcaacaaaaataaatac 3622142  T
Q  322 ggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtggaa 369  Q
    ||||||||| |  |||| || |||| ||| ||||||||||||||||||    
T  3622141 ggaatcaaactcataaactacattttgtgaaagtaatcaaaggtggaa 3622094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 332
Target Start/End: Original strand, 18381 - 18557
Alignment:
Q  156 ttgtagagtttcatatataag-tattaaagtggc-atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagag 253  Q
    |||||||||||||| |||||  ||||||| || | ||||||||| || |||||||||  |||| |||  | ||||||| ||| ||| ||   |||||||     
T  18381 ttgtagagtttcatgtataaaatattaaattgactatattattatttatagagttacttttaaactc--aaaaacaattaaactaagtgacaattgagaa 18478  T
Q  254 tgatcgacatacacaatatcaaaaaagcaaattagaaacatttagcttgcatcaataaaaatgaatatggaatcaaagt 332  Q
    |||||||||| |||||| | ||| ||| || ||| |||||||||| |||||| || |||||||||||||||||||||||    
T  18479 tgatcgacatgcacaattttaaagaagaaagttaaaaacatttagtttgcattaacaaaaatgaatatggaatcaaagt 18557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 41642 - 41710
Alignment:
Q  40 ctgagatctagaggaggaacatactctcagatctcaagtcaaaaccattaggccaactcaagtgggtta 108  Q
    |||||| || |||||||| ||||||||||||||||||| ||| |||| ||||||||| |||||||||||    
T  41642 ctgagacctcgaggaggagcatactctcagatctcaagccaataccactaggccaacccaagtgggtta 41710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 369
Target Start/End: Complemental strand, 44520 - 44342
Alignment:
Q  189 atattattacttttagagttacaattaagctcgtagaaacaatcaaattaaatggtgattgagagtgatcgacatacacaatatcaaaaaagcaaattag 288  Q
    ||||||||| ||||||||||||| | ||  |  |||||||||||||||||| |  |||||||||||| || ||||||| |||  ||||| || |||| |     
T  44520 atattattaattttagagttacattaaaagttatagaaacaatcaaattaagta-tgattgagagtg-tcaacatacaaaatcacaaaagagaaaatcat 44423  T
Q  289 aaacatttagcttgcatcaataaaaatgaatatggaatcaaagttgtaaattaaatttagtggaagtaatcaaaggtggaa 369  Q
    |||||||    ||||||||| ||||||||||| | ||||||| |  ||||||||||   ||| ||||||||||| ||||||    
T  44422 aaacattctttttgcatcaacaaaaatgaataggaaatcaaactcataaattaaataatgtgaaagtaatcaaacgtggaa 44342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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