View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17010_low_11 (Length: 256)

Name: NF17010_low_11
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17010_low_11
NF17010_low_11
[»] chr1 (5 HSPs)
chr1 (16-50)||(12770306-12770340)
chr1 (16-50)||(6783705-6783739)
chr1 (16-50)||(7288118-7288152)
chr1 (16-50)||(35155323-35155357)
chr1 (16-50)||(52870148-52870182)
[»] chr7 (8 HSPs)
chr7 (49-82)||(9495505-9495538)
chr7 (49-82)||(19557555-19557588)
chr7 (50-82)||(22022792-22022824)
chr7 (15-50)||(18829300-18829335)
chr7 (51-82)||(44472625-44472656)
chr7 (16-50)||(35498856-35498890)
chr7 (16-50)||(44388237-44388271)
chr7 (16-48)||(21125050-21125082)
[»] chr4 (10 HSPs)
chr4 (49-82)||(12801302-12801335)
chr4 (50-82)||(6507741-6507773)
chr4 (16-50)||(1861954-1861988)
chr4 (16-50)||(34732787-34732821)
chr4 (16-50)||(40146221-40146255)
chr4 (16-50)||(47308695-47308729)
chr4 (16-50)||(56280005-56280039)
chr4 (49-82)||(29860611-29860644)
chr4 (54-82)||(30779195-30779223)
chr4 (16-48)||(36870796-36870828)
[»] chr3 (9 HSPs)
chr3 (49-82)||(8014874-8014907)
chr3 (49-82)||(8727720-8727753)
chr3 (49-82)||(9079607-9079640)
chr3 (49-82)||(54493450-54493483)
chr3 (16-50)||(33128650-33128684)
chr3 (16-50)||(54493480-54493514)
chr3 (16-48)||(4584241-4584273)
chr3 (54-82)||(34921953-34921981)
chr3 (16-48)||(37116991-37117023)
[»] scaffold0060 (1 HSPs)
scaffold0060 (16-50)||(66826-66860)
[»] scaffold0031 (1 HSPs)
scaffold0031 (16-50)||(94823-94857)
[»] chr8 (3 HSPs)
chr8 (16-50)||(17924737-17924771)
chr8 (16-50)||(33852795-33852829)
chr8 (16-50)||(44445387-44445421)
[»] chr6 (2 HSPs)
chr6 (16-50)||(34658381-34658415)
chr6 (49-82)||(6138162-6138195)
[»] chr5 (3 HSPs)
chr5 (16-50)||(1143884-1143918)
chr5 (16-50)||(41084835-41084869)
chr5 (16-50)||(41210068-41210102)
[»] chr2 (6 HSPs)
chr2 (16-50)||(17816054-17816088)
chr2 (16-50)||(28637931-28637965)
chr2 (49-82)||(7275419-7275452)
chr2 (9-50)||(7275449-7275490)
chr2 (49-82)||(21541015-21541048)
chr2 (17-50)||(22064143-22064176)


Alignment Details
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 12770306 - 12770340
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    |||||||||||||||||||||||||||||||||||    
T  12770306 atattaaagacaaacaattaacatttaactttaat 12770340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 6783739 - 6783705
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  6783739 atattaaagacaaacaattaacagttaactttaat 6783705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 7288152 - 7288118
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  7288152 atattaaagacaaacaattaacagttaactttaat 7288118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 35155323 - 35155357
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  35155323 atattaaagacaaacaattaacagttaactttaat 35155357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 52870148 - 52870182
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  52870148 atattaaagacaaacaattaacagttaactttaat 52870182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 9495505 - 9495538
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  9495505 attggattgtaatattgtagagtttaaagtatta 9495538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 19557588 - 19557555
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  19557588 attggattgtaatattgtagagtttaaagtatta 19557555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 22022792 - 22022824
Alignment:
Q  50 ttggattgtaatattgtagagtttaaagtatta 82  Q
    |||||||||||||||||||||||||||||||||    
T  22022792 ttggattgtaatattgtagagtttaaagtatta 22022824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 18829300 - 18829335
Alignment:
Q  15 aatattaaagacaaacaattaacatttaactttaat 50  Q
    |||||||||||||||||||||||| |||||||||||    
T  18829300 aatattaaagacaaacaattaacagttaactttaat 18829335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 82
Target Start/End: Original strand, 44472625 - 44472656
Alignment:
Q  51 tggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||    
T  44472625 tggattgtaatattgtagagtttaaagtatta 44472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 35498856 - 35498890
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  35498856 atattaaagacaaacaattaacagttaactttaat 35498890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 44388271 - 44388237
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  44388271 atattaaagacaaacaattaacagttaactttaat 44388237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 21125050 - 21125082
Alignment:
Q  16 atattaaagacaaacaattaacatttaacttta 48  Q
    ||||||||||||||||||||||| |||||||||    
T  21125050 atattaaagacaaacaattaacaattaacttta 21125082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 12801302 - 12801335
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  12801302 attggattgtaatattgtagagtttaaagtatta 12801335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 6507773 - 6507741
Alignment:
Q  50 ttggattgtaatattgtagagtttaaagtatta 82  Q
    |||||||||||||||||||||||||||||||||    
T  6507773 ttggattgtaatattgtagagtttaaagtatta 6507741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 1861988 - 1861954
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  1861988 atattaaagacaaacaattaacagttaactttaat 1861954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 34732787 - 34732821
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  34732787 atattaaagacaaacaattaacagttaactttaat 34732821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 40146255 - 40146221
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  40146255 atattaaagacaaacaattaacagttaactttaat 40146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 47308695 - 47308729
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  47308695 atattaaagacaaacaattaacagttaactttaat 47308729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 56280005 - 56280039
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  56280005 atattaaagacaaacaattaacagttaactttaat 56280039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 29860611 - 29860644
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    |||| |||||||||||||||||||||||||||||    
T  29860611 attgaattgtaatattgtagagtttaaagtatta 29860644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 30779223 - 30779195
Alignment:
Q  54 attgtaatattgtagagtttaaagtatta 82  Q
    |||||||||||||||||||||||||||||    
T  30779223 attgtaatattgtagagtttaaagtatta 30779195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 36870828 - 36870796
Alignment:
Q  16 atattaaagacaaacaattaacatttaacttta 48  Q
    ||||||||||||||||||||||||||| |||||    
T  36870828 atattaaagacaaacaattaacatttagcttta 36870796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 8014907 - 8014874
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  8014907 attggattgtaatattgtagagtttaaagtatta 8014874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 8727753 - 8727720
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  8727753 attggattgtaatattgtagagtttaaagtatta 8727720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 9079640 - 9079607
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  9079640 attggattgtaatattgtagagtttaaagtatta 9079607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 54493450 - 54493483
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||||||||||||||||||    
T  54493450 attggattgtaatattgtagagtttaaagtatta 54493483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 33128650 - 33128684
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  33128650 atattaaagacaaacaattaacagttaactttaat 33128684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 54493514 - 54493480
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||| |||||||||||||||||||||||||    
T  54493514 atattaaaggcaaacaattaacatttaactttaat 54493480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 4584241 - 4584273
Alignment:
Q  16 atattaaagacaaacaattaacatttaacttta 48  Q
    ||||||||||||||||||||||| |||||||||    
T  4584241 atattaaagacaaacaattaacagttaacttta 4584273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 34921953 - 34921981
Alignment:
Q  54 attgtaatattgtagagtttaaagtatta 82  Q
    |||||||||||||||||||||||||||||    
T  34921953 attgtaatattgtagagtttaaagtatta 34921981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 37117023 - 37116991
Alignment:
Q  16 atattaaagacaaacaattaacatttaacttta 48  Q
    ||||||||||||||||||||||||||| |||||    
T  37117023 atattaaagacaaacaattaacatttagcttta 37116991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 66826 - 66860
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  66826 atattaaagacaaacaattaacagttaactttaat 66860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 94857 - 94823
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  94857 atattaaagacaaacaattaacagttaactttaat 94823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 17924737 - 17924771
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  17924737 atattaaagacaaacaattaacagttaactttaat 17924771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 33852829 - 33852795
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  33852829 atattaaagacaaacaattaacagttaactttaat 33852795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 44445421 - 44445387
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  44445421 atattaaagacaaacaattaacagttaactttaat 44445387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 34658415 - 34658381
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  34658415 atattaaagacaaacaattaacagttaactttaat 34658381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 6138162 - 6138195
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    ||||||||||||||||||| ||||||||||||||    
T  6138162 attggattgtaatattgtaaagtttaaagtatta 6138195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 1143884 - 1143918
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  1143884 atattaaagacaaacaattaacagttaactttaat 1143918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 41084835 - 41084869
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  41084835 atattaaagacaaacaattaacagttaactttaat 41084869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 41210102 - 41210068
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  41210102 atattaaagacaaacaattaacagttaactttaat 41210068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 17816088 - 17816054
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  17816088 atattaaagacaaacaattaacagttaactttaat 17816054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 28637965 - 28637931
Alignment:
Q  16 atattaaagacaaacaattaacatttaactttaat 50  Q
    ||||||||||||||||||||||| |||||||||||    
T  28637965 atattaaagacaaacaattaacagttaactttaat 28637931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 7275419 - 7275452
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    |||||||||||||||| |||||||||||||||||    
T  7275419 attggattgtaatattatagagtttaaagtatta 7275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 7275490 - 7275449
Alignment:
Q  9 tcgaagaatattaaagacaaacaattaacatttaactttaat 50  Q
    ||||| |||||||||| ||||||||||||| |||||||||||    
T  7275490 tcgaaaaatattaaaggcaaacaattaacagttaactttaat 7275449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 21541015 - 21541048
Alignment:
Q  49 attggattgtaatattgtagagtttaaagtatta 82  Q
    |||||||||||| |||||||||||||||||||||    
T  21541015 attggattgtaaaattgtagagtttaaagtatta 21541048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 22064143 - 22064176
Alignment:
Q  17 tattaaagacaaacaattaacatttaactttaat 50  Q
    |||||||||||||||||||||| |||||||||||    
T  22064143 tattaaagacaaacaattaacagttaactttaat 22064176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University