View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_low_4 (Length: 563)
Name: NF17010_low_4
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 471
Target Start/End: Original strand, 14252795 - 14253246
Alignment:
| Q |
20 |
gtatctagctattgaattgataaatatatattatgctttaaaatcgaagttgcttgtgcctcaaactcatcaagatcaatatcattgtagaactgatcat |
119 |
Q |
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| T |
14252795 |
gtatctagctattgaattgataaatatatattatgctttaaaatcgaagttgcttgtgcctcgaactcatcaagatcaatatcattatagaactgatcat |
14252894 |
T |
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| Q |
120 |
catatagaacagctatagatcaatttcacagattctttcttcgattcatacttggaaaatgtccagaaggatgcaaattcaatcttcttttgcggcttct |
219 |
Q |
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| T |
14252895 |
catatagaacagctatagatcaatttcacagattctttcttcgattcatacttggaaaatgtccagaaggatgcaaatccaatcttcttttgcggcttct |
14252994 |
T |
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| Q |
220 |
tatatcagtctctgattggaaaactagttgaaggaactgcttctgaggtcatctggtcgatacatactgattctgatgttggattagctgaatgcctgct |
319 |
Q |
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| T |
14252995 |
tatatctgtctctgattggaaaactagttgaaggaactgattctgaggtcatctggtcgatacatactgattctgatgttggattagctgaatgcctgct |
14253094 |
T |
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| Q |
320 |
ctttcctgtccggaaacgactcactgtcttgcctgatgaattaccactttcaccaatactggctgccatagtgatagaatactttggccctccactagtc |
419 |
Q |
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| T |
14253095 |
ctttcctgtccggaaacgactcactgtcttgcctgatgaattaccactttcaccaatactggctgccatagtgatagaatactttggccctccactagtc |
14253194 |
T |
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| Q |
420 |
ggtgtttgactgagcaacaaacgcctgcaacagagctcattctaattatgca |
471 |
Q |
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| T |
14253195 |
ggtgtttgactgagcaacaaacgcctgcaacagagctcattctaactatgca |
14253246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 162 - 391
Target Start/End: Original strand, 46714283 - 46714511
Alignment:
| Q |
162 |
gattcatacttggaaaatgtccagaaggatgcaaattcaatcttcttttgcggcttcttatatcagtctctgattggaaaactagttgaaggaactgctt |
261 |
Q |
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| T |
46714283 |
gattcttacttggaaagtgtacagaatgatgatatgtcaatcttcttttacggcttcttatatctgtctctg-ttggaaaactagttgaaggcactgctt |
46714381 |
T |
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| Q |
262 |
ctgaggtcatctggtcgatacatactgattctgatgttggattagctgaatgcctgctctttcctgtccggaaacgactcactgtcttgcctgatgaatt |
361 |
Q |
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| T |
46714382 |
ctgaggtcatctggtccatccgtactgattctgacgttcgaatagctgaatgattggtctgtcctgtctggaaacaactcactgtcttgcctgatgaatt |
46714481 |
T |
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| Q |
362 |
accactttcaccaatactggctgccatagt |
391 |
Q |
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| T |
46714482 |
accactttcaccaatactggcggtcatagt |
46714511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 46714549 - 46714632
Alignment:
| Q |
408 |
cctccactagtcggtgtttgactgagcaacaaacgcctgcaacagagctcattctaattatgcaggtttaacatgaagttatta |
491 |
Q |
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| T |
46714549 |
cctccactaatcggtgtttgactgagcaatgaacgcctgcaacggagctcattctaattatgcaggtttaagacgaagttatta |
46714632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 46714147 - 46714228
Alignment:
| Q |
56 |
tttaaaatcgaagttgcttgtgcctcaaactcatcaagatcaatatcattgtagaactgatcatcatatagaacagctatag |
137 |
Q |
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| T |
46714147 |
tttagaatcgaagttgcttgcgcctccaactcatcaagatcaatatcattataaaattgatcatcgcatagaccatctatag |
46714228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 345
Target Start/End: Original strand, 20060579 - 20060717
Alignment:
| Q |
205 |
tcttttgcggcttcttatatcagtctctgattggaaaactagttgaaggaactgcttctgaggtcatctggtcgatacatactgattctgatgttggatt |
304 |
Q |
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| T |
20060579 |
tcttttgcggcttcttatatctgtctctg-ttggaaaactagttgaa-gcattgcttctcaggtcatctgatcgatacgcactgtttctgaagttcgatt |
20060676 |
T |
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| Q |
305 |
agctgaatgcctgctctttcctgtccggaaacgactcactg |
345 |
Q |
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| T |
20060677 |
acctgaatgactgctctgtcaaggccggaaaccactcactg |
20060717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 20060714 - 20060803
Alignment:
| Q |
377 |
actggctgccatagtgatagaatactttggccctccactagtcggtgtttgactgagcaacaaacgcctgcaacagagctcattctaatt |
466 |
Q |
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| T |
20060714 |
actggttgtcatagtggtagaaaacttcggtcctccactaatcggtacttgactgagcaaggaacgcctgcaacggagctcattctaatt |
20060803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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