View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_low_6 (Length: 518)
Name: NF17010_low_6
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 125 - 488
Target Start/End: Original strand, 2483032 - 2483395
Alignment:
| Q |
125 |
aaaagattataagcacatgtctaaaaaatgaagattataagcacacaaaacatgtgtcaaaatgagattgtcatgtatacctgttatgcttcttcttttc |
224 |
Q |
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| T |
2483032 |
aaaagattataagcacatgcctaaaaaatgaagattataagcacacaaaacatgtgtcaaaatgagattgtcatgtatacccgttatgcttcttcttttc |
2483131 |
T |
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| Q |
225 |
tctactagcatgcctttaatgggtatattgtaacgatttgtgaggaaagtttcccattcctcttaaaaagtagcacatggggcatg-tctatttgctaat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
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| T |
2483132 |
tctactagcatgcctttaatgggtatattgtaacgatttatgaggaaagtttcccattccttttaaaaagtagcacatggggcatgttcta-ttgctaat |
2483230 |
T |
|
| Q |
324 |
tcaaggtgccaaaggcaaggacagggtcatgatctcaactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatcaatgaaggatatgtt |
423 |
Q |
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||||| |||||||| ||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2483231 |
tcaagttgccaaagctaaggacaggttcataatctgaactcagatgggactacattcaaggaaaattaggcttaaaaggcaaatcacataaggatatgtt |
2483330 |
T |
|
| Q |
424 |
tttgctttgttaagcatttatttgttaactttcactttccttgttttccatttggaataaaagtt |
488 |
Q |
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| T |
2483331 |
tttgctttgttaagcatttatttgttaactttcactttccttgttttccatttggaataaaagtt |
2483395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 10294715 - 10295112
Alignment:
| Q |
12 |
aaaggcacataatgtcacaagacaacttaattggcaaagcaagtcaaa-ttctgaatccaataaaaaatattcaagccaaatattgtaacataatccaga |
110 |
Q |
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| T |
10294715 |
aaaggcacataatgtcacaaagaaacttaattagcaaggcaagttaaaattgagaatccaatgaaaa-tctacaagccaaatattgtagcataatccacg |
10294813 |
T |
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| Q |
111 |
ctggtccaaagcttaaaagattataagcacatgtct-aaaaaatgaagattataagcacacaaaacatgtgtcaaaatgagattgtcatgtatacctgtt |
209 |
Q |
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| T |
10294814 |
atgttccaaaggttaacaaattataa--acatgcctgaaaaaattaaggttataagcacatagaacatgtgtgaaaatgtgattgtcaagtataccggtt |
10294911 |
T |
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| Q |
210 |
atgcttcttcttttctcta-ctagcatgcctttaatgggtatattgtaac--gatttgtgaggaaagtttcccattcctcttaaaaagtagcacatgggg |
306 |
Q |
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| T |
10294912 |
atgcttcttcttttccctataaaacat-tctttaatttatgaatagtaacttattttatgaggaaagtttcccattcttcttaaaaagtagcgca----a |
10295006 |
T |
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| Q |
307 |
catg-tctatttgctaattcaaggtgccaaaggcaaggacagggtcatgat---ctcaactcagatgggactacactcaaggaaaattaggcttaaaagg |
402 |
Q |
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| T |
10295007 |
catgttctattt-ctaattcaagttggcaaagccaaggtcaggatcatcataacctcaactcagatgggactacactcaaagaaaatttggcttataaag |
10295105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 2482943 - 2483025
Alignment:
| Q |
12 |
aaaggcacataatgtcacaagacaacttaattggcaaagcaagtcaaattctgaatccaataaaaaatattcaagccaaatatt |
95 |
Q |
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| T |
2482943 |
aaaggcacataatgtcacaaaacaacttaattggcaaagcatgtcaaattcagaatccaataaaaaa-attcaagccaaatatt |
2483025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 409
Target Start/End: Complemental strand, 2575206 - 2574983
Alignment:
| Q |
183 |
aaaatgagattgtcatgtatacctgttatgcttcttcttttctctactagcatgcctttaatgggtatattgtaacgatttgt--gaggaaagtttccca |
280 |
Q |
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|||||| |||||||| |||||| ||||||| |||| |||||||||| | || |||||||||| ||| ||||| || |||| | ||||||||||||||| |
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| T |
2575206 |
aaaatgtgattgtcaagtatacttgttatggctcttattttctctacaaacaagcctttaatgtgtaaattgttactatttttatgaggaaagtttccca |
2575107 |
T |
|
| Q |
281 |
ttcctcttaaaaagtagcacatggggcatgtctatttgctaattcaaggtgccaaaggcaaggacagggtcatgatctcaactcagatgggactacactc |
380 |
Q |
| |
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|||||||| |||||||||||| ||||| |||||||||||| || | ||| ||| || | |||||| | |||||||||||||||| ||||||| |
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| T |
2575106 |
ttcctctt-aaaagtagcaca----acatgttctcctgctaattcaagttggccaagccaaagaaaaggtcataacctcaactcagatgggaatacactc |
2575012 |
T |
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| Q |
381 |
aaggaaaattaggcttaaaaggcaaatca |
409 |
Q |
| |
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| T |
2575011 |
atggaaaatttggcttataaggaaaatca |
2574983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 2581601 - 2581793
Alignment:
| Q |
12 |
aaaggcacataatgtcacaagacaacttaattggcaaagcaagtcaaa-ttctgaatccaataaaaaatattcaagccaaatattgtaacataatccaga |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||||| ||| || ||||||||| |||| | | ||||||||||||||| ||||||||| |
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| T |
2581601 |
aaaggcacataatgtcacaaagcaacttaattgggaaggcaagttaaaattgagaatccaatgaaaa-tctacaagccaaatattgtggcataatccacg |
2581699 |
T |
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| Q |
111 |
ctggtccaaagcttaaaagattataagcacatgtct-aaaaaatgaagattataagcacacaaaacatgtgtcaaaatgagattgtcatgtatacc |
205 |
Q |
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|| | ||||| |||||| || ||| |||||||| ||||||| ||| ||||||||||| | |||||||||||||||| |||||||| ||||||| |
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| T |
2581700 |
atgtttcaaaggttaaaattttttaa--acatgtctgaaaaaattaaggttataagcacatagaacatgtgtcaaaatgtgattgtcaagtatacc |
2581793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 2581840 - 2581889
Alignment:
| Q |
360 |
aactcagatgggactacactcaaggaaaattaggcttaaaaggcaaatca |
409 |
Q |
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| T |
2581840 |
aactcagatgggactacaatcaaagaaaatttggcttataaagcaaatca |
2581889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 409
Target Start/End: Original strand, 22203680 - 22203906
Alignment:
| Q |
181 |
tcaaaatgagattgtcatgtatacctgttatgcttcttcttttctctactagcatgcctttaatgggtatattgtaacgatttgt--gaggaaagtttcc |
278 |
Q |
| |
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|||||||| |||||||| |||||| ||||||| |||| ||| |||||| | || ||| |||||| ||| ||| | | |||| | || |||||||||| |
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| T |
22203680 |
tcaaaatgtgattgtcaagtatacatgttatgtctcttatttcctctacaaacaagcccttaatgtgtaaattcttattatttttatgatgaaagtttcc |
22203779 |
T |
|
| Q |
279 |
cattcctcttaaaaagtagcacatggggcatgt-ctatttgctaattcaaggtgccaaaggcaaggacagggtcatgatctcaactcagatgggactaca |
377 |
Q |
| |
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| T |
22203780 |
cattcctcttaaaaagtagaacaa----catgttccattt-ctaattcaagttggcaaagccaaggacatggtcataacctcaactcagatgggactaca |
22203874 |
T |
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| Q |
378 |
ctcaaggaaaattaggcttaaaaggcaaatca |
409 |
Q |
| |
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|||| |||||||| |||||| |||| |||||| |
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| T |
22203875 |
ctcatggaaaatttggcttataaggaaaatca |
22203906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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