View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_low_8 (Length: 413)
Name: NF17010_low_8
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 42551422 - 42551038
Alignment:
| Q |
16 |
aatatataaatgttgcttatatctaaacttctgcaccatacaa-cttttctccatagttcatcaattttcttatgagtgtattctcttgaaatattcata |
114 |
Q |
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| T |
42551422 |
aatatataaatgttgcttatatctaaacttctgcaccatacactcttttctccatagttcatcaattttcttatgagtgtattctcttgaaatattcata |
42551323 |
T |
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| Q |
115 |
tagcaaagctacttt----gttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatatacctca |
210 |
Q |
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| T |
42551322 |
tagcaaatctactttaattgttctatacatggcttcaaatatttgcaaaccttcacgtcgtgataattctctaataataaaaccaaccaaatatacctca |
42551223 |
T |
|
| Q |
211 |
aagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcattcccacgaagacaatgctgcaccaccg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551222 |
aagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcattcccacgaagacaatgctgcaccaccg |
42551123 |
T |
|
| Q |
311 |
ttggattccaacacaagaagagcaacggtacttcactccctcgacgacgcgtaagggctctccagagagcttctgaagcagtaat |
395 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42551122 |
ttggattccaacacaagaagaacaacggtacttcactccctcgtcgacgcgtaagggctctccagagagcttctgaagcagtaat |
42551038 |
T |
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