View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17010_low_9 (Length: 384)
Name: NF17010_low_9
Description: NF17010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17010_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 31525433 - 31525806
Alignment:
| Q |
1 |
ggaacatgtcaattaatccaaatcagacaactatgtggttgtactatacttttttacaaaattatcaa-gtgatttcttggagtataattattgtggatg |
99 |
Q |
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| T |
31525433 |
ggaacatgtcaattcatccaaatcagacaactatgtggttgtactatacttttttacaaaattatcaaagtgatttcttggagtataattattggggatg |
31525532 |
T |
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| Q |
100 |
ttttggtgaggcaaatgggataaaggatgaagaaatacaaatgggataactattaagagaagcgt-------gctctgagccacatgttgcacagttaga |
192 |
Q |
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| T |
31525533 |
ttttggtgaggcgaatgggataaaggatgaagaaatacaaatgagataactattaagagaagcgtgatgcgtgctctgagccacaggttgcacagttaga |
31525632 |
T |
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| Q |
193 |
aggaaaattgaaggagtcagctattgtccaagacgcgacactcgaaaggatgtgtgcatcacacactaactgtttaagaaatattggaaatagctcgcct |
292 |
Q |
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| T |
31525633 |
tggaaaattgaaggagtcagctattgtccaagacgcgacactcgaaaggatgtgtgcatcacacactaactgttttagaaatattggaaatagttcgcct |
31525732 |
T |
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| Q |
293 |
ataaaagagaggtttcaccttacttgagaaacatgtgtagatgaggagaagaatgtgaaattgcaatataggaag |
367 |
Q |
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| T |
31525733 |
ataaaagagaggttgcaccttacttgagaaacatgcgtagatgaggagaagaatgt-aaattgcaatataggaag |
31525806 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 47236669 - 47236715
Alignment:
| Q |
34 |
tgtggttgtactatacttttttacaaaattatcaagtgatttcttgg |
80 |
Q |
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| T |
47236669 |
tgtggttgtgctatacatttttacaagattatcaagtgaattcttgg |
47236715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 27602852 - 27602893
Alignment:
| Q |
18 |
ccaaatcagacaactatgtggttgtactatacttttttacaa |
59 |
Q |
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| T |
27602852 |
ccaaatcagacaactttgtggtcgtactatactttcttacaa |
27602893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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