View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17011_low_1 (Length: 682)

Name: NF17011_low_1
Description: NF17011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17011_low_1
NF17011_low_1
[»] chr6 (29 HSPs)
chr6 (7-663)||(31284504-31285160)
chr6 (44-658)||(26729210-26729844)
chr6 (44-658)||(26623232-26623867)
chr6 (19-114)||(27214648-27214743)
chr6 (19-114)||(27234485-27234580)
chr6 (58-120)||(28234830-28234892)
chr6 (326-379)||(26647031-26647084)
chr6 (326-379)||(26752999-26753052)
chr6 (326-363)||(26802998-26803035)
chr6 (58-119)||(28181381-28181442)
chr6 (58-119)||(28227217-28227278)
chr6 (58-120)||(26937373-26937435)
chr6 (326-360)||(27610716-27610750)
chr6 (58-120)||(28185633-28185695)
chr6 (58-120)||(28297571-28297633)
chr6 (58-120)||(28325744-28325806)
chr6 (58-120)||(28514440-28514502)
chr6 (326-363)||(25539095-25539132)
chr6 (326-379)||(27592598-27592651)
chr6 (326-379)||(27604281-27604334)
chr6 (326-379)||(27677197-27677250)
chr6 (326-379)||(27679502-27679555)
chr6 (326-379)||(27705981-27706034)
chr6 (74-110)||(25580002-25580038)
chr6 (74-110)||(26056209-26056245)
chr6 (74-110)||(26076179-26076215)
chr6 (20-120)||(27337923-27338023)
chr6 (20-120)||(27398663-27398763)
chr6 (68-120)||(28098215-28098267)
[»] scaffold0038 (3 HSPs)
scaffold0038 (58-120)||(34992-35054)
scaffold0038 (58-119)||(27715-27776)
scaffold0038 (58-120)||(117059-117121)
[»] chr1 (1 HSPs)
chr1 (74-163)||(28127481-28127570)
[»] chr2 (1 HSPs)
chr2 (64-120)||(3279976-3280032)
[»] chr4 (4 HSPs)
chr4 (51-120)||(5090806-5090875)
chr4 (327-363)||(18679149-18679185)
chr4 (327-363)||(18723674-18723710)
chr4 (327-363)||(18731093-18731129)
[»] scaffold0019 (1 HSPs)
scaffold0019 (64-120)||(58140-58196)


Alignment Details
Target: chr6 (Bit Score: 612; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 7 - 663
Target Start/End: Original strand, 31284504 - 31285160
Alignment:
Q  7 ggagtagcataggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaact 106  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284504 ggagaagcattggctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaact 31284603  T
Q  107 tgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaa 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284604 tgtctggcgaccatcgttctcctgggtagccttcttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaa 31284703  T
Q  207 agggaaacattttttatttatatatttaaacaaatactagttattgtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtgatt 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284704 agggaaacattttttatttatatatttaaacaaatattagttattgtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtgatt 31284803  T
Q  307 gnnnnnnnatttgttcaccaacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaa 406  Q
    |       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31284804 gtttttttatttgttcaccaacttatcttgttgggcatgaatagatatgaatacaagcttactgggaagatagcttttaatcagacaccagacttgtcaa 31284903  T
Q  407 gtgattgtagtcagaggtactctacttccctttaatcttgttttgcctttaatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaa 506  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284904 gtgattgtagtcagaggtactctacttcccttgaatcttgttttgcctttaatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaa 31285003  T
Q  507 tttatatattcttaaactagaattagttttttataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31285004 tttatatattcttaaactagaattagttttttataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgt 31285103  T
Q  607 ttggactaacatatctagttgaacatgaacagatatgaatatgattttattggagac 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31285104 ttggactaacatatctagttgaacatgaacagatatgaatatgattttattggagac 31285160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 44 - 658
Target Start/End: Original strand, 26729210 - 26729844
Alignment:
Q  44 ataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttc 143  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  26729210 ataatacatataatatggagaggttgcaaaaatggaagatagctcttgcacaagcagctaacttgtctggagaccatcgtcatcctgggtagcctacttc 26729309  T
Q  144 acttcaatcttgttttgccttc----------------ttcaatttttattcctcaatcattccatataaatgcttaaaagggaaaca---ttttttatt 224  Q
    ||||||||||||||||||||||                ||||||| ||||||| |||||||||||||| |||||||||||||||||||   |||||| ||    
T  26729310 acttcaatcttgttttgccttcatatatgctttatttcttcaattcttattccccaatcattccatattaatgcttaaaagggaaacacaattttttgtt 26729409  T
Q  225 tatatatttaaacaaatactagttatt-gtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtgattgnnnnnnnatttgttca 323  Q
    |||||||||||||||||| ||| |||| |||| |||||||| |||||||||||||| ||| | || |||||||| ||||||||        |||||| ||    
T  26729410 tatatatttaaacaaatattaggtatttgtatatcaaaacatttagaattgtatgacataattgttaagatataaatgtgattatttttttatttgtgca 26729509  T
Q  324 ccaacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtga---ttgtagtcag 420  Q
     |||   |||||||||| ||| ||||||||||||||||||||| || |||||||| || || | |||||||| |||| |||||| ||   |||||||||     
T  26729510 acaa---atcttgttgg-cattaatagatatgaatacaagcttactaggaagataactcttgaccagacaccggactcgtcaagcgaccattgtagtcaa 26729605  T
Q  421 aggtactctacttccctttaatcttgttttgcctt---taatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaatttatatattc 517  Q
     ||||||||||||| ||| ||||||||||||||||   || ||||| | ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  26729606 gggtactctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaaaacaatttatatattc 26729705  T
Q  518 ttaaactagaattagtttttt-ataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgtttggactaac 616  Q
    |||||||| |||||||||||| |||||||||  |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||  ||||||    
T  26729706 ttaaactaaaattagtttttttataactcaa--caattaaaattt-ataatataattattaatacatgaatgttattgtcatgttgatgtttctactaac 26729802  T
Q  617 atatctagttgaacatgaacagatatgaatatgattttattg 658  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  26729803 atatctagctggacatgaacagatatgaatatgattttattg 26729844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 44 - 658
Target Start/End: Original strand, 26623232 - 26623867
Alignment:
Q  44 ataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttc 143  Q
    |||||||| || ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  26623232 ataatacatataatatggagaggttgcaaaaatggaagatagctcttgcacaagcagctaacttgtctggagaccatcgtcatcctgggtagcctacttc 26623331  T
Q  144 acttcaatcttgttttgccttc----------------ttcaatttttattcctcaatcattccatataaatgcttaaaagggaaaca---ttttttatt 224  Q
    ||||||||||||||||||||||                ||||||| ||||||| |||||||||||||| |||||||||||||||||||   |||||| ||    
T  26623332 acttcaatcttgttttgccttcatatatgctttatttcttcaattcttattccccaatcattccatattaatgcttaaaagggaaacacaattttttgtt 26623431  T
Q  225 tatatatttaaacaaatactagttatt-gtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtgattgnnnnnnn-atttgttc 322  Q
    |||||||||||||||||| ||| |||| |||| |||||||| |||||||||||||| ||| | || |||||||| ||||||||         |||||| |    
T  26623432 tatatatttaaacaaatattaggtatttgtatatcaaaacatttagaattgtatgacataattgttaagatataaatgtgattattttttttatttgtgc 26623531  T
Q  323 accaacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtga---ttgtagtca 419  Q
    | |||   |||||||||| ||| ||||||||||||||||||||| || |||||||| || || | |||||||| |||| |||||| ||   |||||||||    
T  26623532 aacaa---atcttgttgg-cattaatagatatgaatacaagcttactaggaagataactcttgaccagacaccggactcgtcaagcgaccattgtagtca 26623627  T
Q  420 gaggtactctacttccctttaatcttgttttgcctt---taatttatgtacctaaatcattcaatcttaaagcttaaatgggaaccacaatttatatatt 516  Q
      ||||||||||||| ||| ||||||||||||||||   || ||||| | ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  26623628 agggtactctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaaaacaatttatatatt 26623727  T
Q  517 cttaaactagaattagtttttt-ataactcaaaacaatgaaaattttataatataattatcaatacatgaatgtgattgtcatgttgttgtttggactaa 615  Q
    ||||||||| |||||||||||| |||||||||  |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||  |||||    
T  26623728 cttaaactaaaattagtttttttataactcaa--caattaaaattt-ataatataattattaatacatgaatgttattgtcatgttgatgtttctactaa 26623824  T
Q  616 catatctagttgaacatgaacagatatgaatatgattttattg 658  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  26623825 catatctagctggacatgaacagatatgaatatgattttattg 26623867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 27214648 - 27214743
Alignment:
Q  19 gctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggc 114  Q
    |||||||||||||||||||| ||| |||| |  ||  | |||||  ||||||| |||||||||||||||||||  ||||| |||||||| ||||||    
T  27214648 gctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggc 27214743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 27234580 - 27234485
Alignment:
Q  19 gctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggc 114  Q
    |||||||||||||||||||| ||| |||| |  ||  | |||||  ||||||| |||||||||||||||||||  ||||| |||||||| ||||||    
T  27234580 gctaagcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggc 27234485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 28234830 - 28234892
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||| |||||||||||| || ||||||| |||||| |||||    
T  28234830 atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccat 28234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 26647031 - 26647084
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||||| || |||||||||||||||||||||| ||  |||||||||||    
T  26647031 aacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatag 26647084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 26752999 - 26753052
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||||| || |||||||||||||||||||||| ||  |||||||||||    
T  26752999 aacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatag 26753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 26802998 - 26803035
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaag 363  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  26802998 aacttatcttgttggacatgaatagatatgaatacaag 26803035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 28181381 - 28181442
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 119  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  28181381 atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccacca 28181442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 28227217 - 28227278
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 119  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  28227217 atggataggttgcagaaatggaagatggctcttactcaaactgctaacttctctggccacca 28227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 26937373 - 26937435
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||  |||||||||||||||||||  ||||| || |||||||||||| |||||    
T  26937373 atggagaggttgcggaaatggaagatagctcttaaccaagcggcaaacttgtctggccaccat 26937435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 27610750 - 27610716
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatac 360  Q
    |||||||||| ||||||||||||||||||||||||    
T  27610750 aacttatcttattgggcatgaatagatatgaatac 27610716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 28185633 - 28185695
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28185633 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 28297633 - 28297571
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28297633 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28297571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 28325744 - 28325806
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| || ||| |||||    
T  28325744 atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccat 28325806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 28514440 - 28514502
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||  |||||||||||| | |||||||| |||||| |||||    
T  28514440 atggagaggttgcagaaatggaagagtgctcttactcaaactgctaacttctctggccaccat 28514502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 25539095 - 25539132
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaag 363  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  25539095 aacttatcttattggacatgaatagatatgaatacaag 25539132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 27592651 - 27592598
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27592651 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27592598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 27604334 - 27604281
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||| |||| ||||||||||||||||||| |||||  ||| |||||||    
T  27604334 aacttatcttattggacatgaatagatatgaatacgagcttattggaaagatag 27604281  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 27677250 - 27677197
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27677250 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27677197  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 27679502 - 27679555
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27679502 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27679555  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 27706034 - 27705981
Alignment:
Q  326 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 379  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27706034 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27705981  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 25580002 - 25580038
Alignment:
Q  74 aatggaagatagctcttactcaagcagctaacttgtc 110  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  25580002 aatggaagatagctcttacccaagctgctaacttgtc 25580038  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 26056209 - 26056245
Alignment:
Q  74 aatggaagatagctcttactcaagcagctaacttgtc 110  Q
    |||||||||| |||||||||||||| |||||||||||    
T  26056209 aatggaagatggctcttactcaagctgctaacttgtc 26056245  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 26076179 - 26076215
Alignment:
Q  74 aatggaagatagctcttactcaagcagctaacttgtc 110  Q
    |||||||||| |||||||||||||| |||||||||||    
T  26076179 aatggaagatggctcttactcaagctgctaacttgtc 26076215  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 27338023 - 27337923
Alignment:
Q  20 ctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 119  Q
    ||||||||||||| | ||||||| |||| |  ||  | ||||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||| ||||    
T  27338023 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27337924  T
Q  120 t 120  Q
    |    
T  27337923 t 27337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 27398763 - 27398663
Alignment:
Q  20 ctaagcatgaagagaggttccaacataatacagatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 119  Q
    ||||||||||||| | ||||||| |||| |  ||  | ||||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||| ||||    
T  27398763 ctaagcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccacca 27398664  T
Q  120 t 120  Q
    |    
T  27398663 t 27398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 28098267 - 28098215
Alignment:
Q  68 tgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    |||| ||||||||||| |||||||  ||||||||||||||||| ||| |||||    
T  28098267 tgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccat 28098215  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 34992 - 35054
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||| |||||||||||| || ||||||| |||||| |||||    
T  34992 atggagaggttgcagaaatggaagatggctcttactcaaacatctaacttttctggccaccat 35054  T

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Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 27715 - 27776
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgacca 119  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||||| ||||    
T  27715 atggataggttgcagaaatggaagattgctcttactcaaactgctaacttctctggccacca 27776  T

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Target: scaffold0038; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 117059 - 117121
Alignment:
Q  58 atggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    ||||| |||||||| ||||||||||| |||||||||||| | |||||||| || ||| |||||    
T  117059 atggagaggttgcagaaatggaagatggctcttactcaaactgctaacttctcaggccaccat 117121  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 28127570 - 28127481
Alignment:
Q  74 aatggaagatagctcttactcaagcagctaacttgtctggcgaccatcgttctcctgggtagcctacttcacttcaatcttgttttgcct 163  Q
    |||||||||||||||| || ||||| ||||||||||| ||| |||||  |  ||| ||||| ||||||  |||| |||||||||||||||    
T  28127570 aatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtccagggtaccctactatacttaaatcttgttttgcct 28127481  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 3279976 - 3280032
Alignment:
Q  64 aggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||| ||| |||||    
T  3279976 aggttgcataaatggaagatggctcttaaccaagcagctaacttgtccggccaccat 3280032  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 5090875 - 5090806
Alignment:
Q  51 agatcatatggaaaggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    |||| ||||||| | |||||| |||||| |||| |||||||  ||||||||||| ||||||||| |||||    
T  5090875 agataatatggagaagttgcagaaatgggagatggctcttaagcaagcagctaatttgtctggctaccat 5090806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 18679185 - 18679149
Alignment:
Q  327 acttatcttgttgggcatgaatagatatgaatacaag 363  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18679185 acttatcttattggacatgaatagatatgaatacaag 18679149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 18723710 - 18723674
Alignment:
Q  327 acttatcttgttgggcatgaatagatatgaatacaag 363  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18723710 acttatcttattggacatgaatagatatgaatacaag 18723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 18731129 - 18731093
Alignment:
Q  327 acttatcttgttgggcatgaatagatatgaatacaag 363  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18731129 acttatcttattggacatgaatagatatgaatacaag 18731093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 58196 - 58140
Alignment:
Q  64 aggttgcaaaaatggaagatagctcttactcaagcagctaacttgtctggcgaccat 120  Q
    |||||||| |||||||||| ||||||||||||  | |||||||| |||||| |||||    
T  58196 aggttgcagaaatggaagacagctcttactcagactgctaacttctctggccaccat 58140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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