View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17011_low_2 (Length: 417)

Name: NF17011_low_2
Description: NF17011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17011_low_2
NF17011_low_2
[»] chr8 (37 HSPs)
chr8 (286-387)||(11533194-11533296)
chr8 (288-400)||(1876512-1876624)
chr8 (295-387)||(12002238-12002331)
chr8 (295-400)||(44220740-44220843)
chr8 (290-387)||(14016909-14017007)
chr8 (295-400)||(31844247-31844352)
chr8 (292-400)||(1445163-1445271)
chr8 (295-383)||(37564378-37564467)
chr8 (289-400)||(24869379-24869485)
chr8 (299-371)||(18842314-18842386)
chr8 (294-400)||(35501097-35501203)
chr8 (295-400)||(38047639-38047744)
chr8 (325-400)||(40628997-40629072)
chr8 (295-400)||(41960011-41960114)
chr8 (293-360)||(29487130-29487197)
chr8 (297-371)||(7627906-7627980)
chr8 (295-387)||(1773843-1773937)
chr8 (300-400)||(20522920-20523020)
chr8 (282-354)||(884374-884446)
chr8 (319-367)||(9004995-9005043)
chr8 (327-367)||(17599231-17599271)
chr8 (334-387)||(44907228-44907283)
chr8 (288-367)||(20279618-20279697)
chr8 (288-367)||(21066245-21066324)
chr8 (83-154)||(32342760-32342831)
chr8 (83-154)||(32355247-32355318)
chr8 (83-154)||(32359365-32359436)
chr8 (83-154)||(32371901-32371972)
chr8 (317-387)||(37449533-37449604)
chr8 (282-360)||(12782735-12782813)
chr8 (342-399)||(14453699-14453757)
chr8 (286-383)||(31264959-31265057)
chr8 (297-371)||(39594548-39594621)
chr8 (295-360)||(36348559-36348624)
chr8 (335-371)||(2376787-2376823)
chr8 (320-383)||(30158108-30158172)
chr8 (292-360)||(39644204-39644272)
[»] chr3 (29 HSPs)
chr3 (292-399)||(24313519-24313627)
chr3 (295-400)||(29611991-29612097)
chr3 (283-400)||(45757888-45758005)
chr3 (286-400)||(3027014-3027129)
chr3 (83-182)||(20609999-20610098)
chr3 (288-386)||(48551004-48551103)
chr3 (295-400)||(11623502-11623608)
chr3 (51-182)||(17036171-17036308)
chr3 (325-400)||(20821304-20821380)
chr3 (295-358)||(50604024-50604087)
chr3 (272-385)||(25317753-25317867)
chr3 (340-400)||(40614295-40614356)
chr3 (325-383)||(12140146-12140205)
chr3 (289-399)||(46725622-46725733)
chr3 (289-383)||(54290823-54290918)
chr3 (331-400)||(14146107-14146176)
chr3 (319-400)||(28691954-28692035)
chr3 (335-400)||(37359477-37359543)
chr3 (293-355)||(39651902-39651964)
chr3 (335-384)||(38101341-38101390)
chr3 (320-399)||(37388403-37388482)
chr3 (299-367)||(50368469-50368537)
chr3 (315-371)||(54911192-54911248)
chr3 (319-385)||(22772855-22772922)
chr3 (71-142)||(43135204-43135275)
chr3 (297-371)||(16678898-16678971)
chr3 (83-145)||(37382971-37383033)
chr3 (325-397)||(12908850-12908923)
chr3 (295-381)||(25461442-25461529)
[»] chr1 (32 HSPs)
chr1 (289-385)||(39973857-39973954)
chr1 (286-400)||(16113881-16113995)
chr1 (291-384)||(35259091-35259185)
chr1 (290-385)||(3047833-3047929)
chr1 (297-387)||(42573811-42573902)
chr1 (297-387)||(48947177-48947268)
chr1 (295-400)||(31807809-31807915)
chr1 (295-400)||(35543433-35543538)
chr1 (295-387)||(34861254-34861347)
chr1 (295-400)||(31042972-31043077)
chr1 (319-386)||(48929-48997)
chr1 (83-175)||(26273629-26273721)
chr1 (334-400)||(290601-290667)
chr1 (295-400)||(40053264-40053369)
chr1 (331-382)||(33791786-33791838)
chr1 (335-384)||(51904614-51904664)
chr1 (320-400)||(27934758-27934839)
chr1 (335-398)||(1656447-1656511)
chr1 (295-400)||(49478783-49478889)
chr1 (289-360)||(2864108-2864179)
chr1 (300-367)||(5250964-5251031)
chr1 (295-354)||(39150553-39150612)
chr1 (284-367)||(39912273-39912356)
chr1 (284-367)||(46592532-46592614)
chr1 (297-360)||(47031457-47031520)
chr1 (291-360)||(1048739-1048807)
chr1 (340-400)||(8791469-8791530)
chr1 (335-399)||(32787286-32787351)
chr1 (104-181)||(33330735-33330812)
chr1 (319-387)||(40286853-40286922)
chr1 (325-400)||(759256-759332)
chr1 (295-351)||(17112674-17112730)
[»] chr7 (28 HSPs)
chr7 (319-400)||(44452071-44452153)
chr7 (274-400)||(34299773-34299899)
chr7 (318-400)||(43492231-43492314)
chr7 (325-387)||(19619993-19620056)
chr7 (83-175)||(14088690-14088782)
chr7 (83-175)||(14398708-14398800)
chr7 (331-385)||(5482452-5482506)
chr7 (40-182)||(6770431-6770580)
chr7 (334-400)||(8237960-8238026)
chr7 (283-400)||(3267640-3267757)
chr7 (289-371)||(31498688-31498770)
chr7 (123-175)||(25491775-25491827)
chr7 (318-400)||(46716173-46716255)
chr7 (298-395)||(38988680-38988778)
chr7 (295-387)||(25176330-25176423)
chr7 (325-400)||(24610868-24610943)
chr7 (325-400)||(26872814-26872890)
chr7 (325-387)||(24299173-24299236)
chr7 (335-400)||(25036994-25037060)
chr7 (297-371)||(26871745-26871818)
chr7 (335-400)||(37135461-37135527)
chr7 (295-360)||(27338233-27338298)
chr7 (295-360)||(35599872-35599937)
chr7 (335-387)||(41150057-41150110)
chr7 (291-355)||(23015715-23015779)
chr7 (295-398)||(27123245-27123348)
chr7 (295-355)||(28770448-28770508)
chr7 (86-142)||(36282448-36282504)
[»] chr2 (40 HSPs)
chr2 (287-384)||(24389668-24389766)
chr2 (297-385)||(6334716-6334805)
chr2 (290-387)||(30869604-30869700)
chr2 (295-400)||(12848502-12848606)
chr2 (295-386)||(29685747-29685839)
chr2 (71-174)||(19952521-19952624)
chr2 (295-400)||(431663-431769)
chr2 (295-383)||(6411420-6411509)
chr2 (314-387)||(3074070-3074145)
chr2 (295-367)||(3882587-3882659)
chr2 (295-385)||(30822764-30822854)
chr2 (290-400)||(565722-565833)
chr2 (295-383)||(32859756-32859845)
chr2 (331-387)||(33068585-33068642)
chr2 (325-399)||(8964393-8964467)
chr2 (325-399)||(9049181-9049255)
chr2 (295-382)||(28858076-28858162)
chr2 (320-371)||(33454964-33455015)
chr2 (290-360)||(1334954-1335024)
chr2 (335-400)||(30523014-30523079)
chr2 (50-149)||(7886774-7886875)
chr2 (336-387)||(12762913-12762965)
chr2 (295-367)||(18227093-18227165)
chr2 (284-391)||(19890227-19890335)
chr2 (83-183)||(44188569-44188669)
chr2 (292-351)||(14102379-14102438)
chr2 (284-363)||(40874775-40874854)
chr2 (309-363)||(8086940-8086994)
chr2 (319-400)||(11385447-11385529)
chr2 (290-399)||(12205485-12205595)
chr2 (136-182)||(24983787-24983833)
chr2 (318-395)||(25622528-25622604)
chr2 (298-360)||(37993052-37993114)
chr2 (319-361)||(39647842-39647884)
chr2 (295-360)||(45076198-45076262)
chr2 (319-386)||(4655004-4655072)
chr2 (292-360)||(9449023-9449091)
chr2 (297-365)||(27133049-27133117)
chr2 (295-383)||(37082247-37082335)
chr2 (286-385)||(37284930-37285029)
[»] chr5 (26 HSPs)
chr5 (83-179)||(42615042-42615138)
chr5 (297-399)||(14309118-14309220)
chr5 (289-360)||(34032160-34032231)
chr5 (295-388)||(10410421-10410515)
chr5 (90-175)||(1279747-1279832)
chr5 (331-385)||(38594975-38595030)
chr5 (335-399)||(17774312-17774377)
chr5 (279-367)||(17098249-17098337)
chr5 (325-400)||(36609161-36609236)
chr5 (320-371)||(12221433-12221484)
chr5 (342-400)||(28639570-28639629)
chr5 (325-387)||(41568709-41568772)
chr5 (319-387)||(4695067-4695136)
chr5 (295-360)||(25437945-25438010)
chr5 (295-355)||(112561-112621)
chr5 (337-387)||(27325866-27325917)
chr5 (295-385)||(779057-779147)
chr5 (335-388)||(43000760-43000814)
chr5 (281-385)||(23023590-23023695)
chr5 (286-367)||(25415927-25416008)
chr5 (330-371)||(26686711-26686752)
chr5 (330-371)||(26956442-26956483)
chr5 (301-385)||(27016648-27016733)
chr5 (319-360)||(31914165-31914206)
chr5 (286-385)||(30104766-30104866)
chr5 (319-363)||(39335665-39335709)
[»] chr6 (13 HSPs)
chr6 (290-400)||(13445761-13445871)
chr6 (76-182)||(4231729-4231835)
chr6 (295-363)||(5704624-5704692)
chr6 (334-400)||(23344581-23344648)
chr6 (295-400)||(27752617-27752724)
chr6 (325-400)||(29716794-29716870)
chr6 (335-387)||(10364754-10364807)
chr6 (297-353)||(30739572-30739628)
chr6 (83-182)||(6418793-6418892)
chr6 (346-398)||(34552354-34552407)
chr6 (293-355)||(11720953-11721015)
chr6 (285-318)||(2963177-2963210)
chr6 (295-360)||(30509287-30509352)
[»] chr4 (39 HSPs)
chr4 (298-386)||(49951733-49951822)
chr4 (293-387)||(23136549-23136644)
chr4 (289-387)||(52650732-52650831)
chr4 (297-385)||(53261531-53261620)
chr4 (289-385)||(8297836-8297933)
chr4 (290-355)||(49949971-49950036)
chr4 (314-387)||(17970800-17970875)
chr4 (291-400)||(21687615-21687724)
chr4 (305-371)||(40252637-40252703)
chr4 (316-387)||(21241119-21241191)
chr4 (295-371)||(47937835-47937910)
chr4 (292-360)||(48097920-48097988)
chr4 (300-386)||(22889236-22889323)
chr4 (300-386)||(22940900-22940987)
chr4 (292-359)||(27748409-27748475)
chr4 (334-400)||(23614626-23614692)
chr4 (335-400)||(35153262-35153328)
chr4 (299-360)||(7852614-7852675)
chr4 (318-371)||(31262910-31262962)
chr4 (284-360)||(20394598-20394674)
chr4 (325-400)||(36876087-36876162)
chr4 (295-371)||(37461532-37461607)
chr4 (319-371)||(40173537-40173589)
chr4 (335-371)||(45743326-45743362)
chr4 (295-359)||(54700913-54700977)
chr4 (334-400)||(3179036-3179103)
chr4 (314-361)||(21240659-21240706)
chr4 (295-386)||(49795116-49795207)
chr4 (282-383)||(2063434-2063535)
chr4 (325-398)||(38682021-38682095)
chr4 (318-399)||(53622297-53622379)
chr4 (297-367)||(54552809-54552879)
chr4 (334-367)||(4391978-4392011)
chr4 (83-164)||(20113793-20113874)
chr4 (295-360)||(42370383-42370448)
chr4 (295-360)||(46010634-46010699)
chr4 (335-399)||(49622976-49623041)
chr4 (295-367)||(28005306-28005378)
chr4 (320-387)||(50617492-50617560)
[»] scaffold0010 (1 HSPs)
scaffold0010 (291-400)||(26669-26777)
[»] scaffold0092 (1 HSPs)
scaffold0092 (51-179)||(46360-46493)
[»] scaffold0053 (1 HSPs)
scaffold0053 (314-371)||(5752-5809)
[»] scaffold0236 (1 HSPs)
scaffold0236 (335-371)||(19578-19614)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 11533194 - 11533296
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgc 384  Q
    |||||||| |||||||||||||||| |||||| ||||| ||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  11533194 aaataagggtcttgttaacgagtgttttcgggacactctttaaacatgttaaattaataaattattctttaaaaatgtcaaagttttcaatttccaatgc 11533293  T
Q  385 act 387  Q
    |||    
T  11533294 act 11533296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 1876624 - 1876512
Alignment:
Q  288 ataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcac 386  Q
    |||||| ||||||||||||||| |  |||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  1876624 ataaggttcttgttaacgagtgcccccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcac 1876525  T
Q  387 ttaattacacaaac 400  Q
     | |||||||||||    
T  1876524 -tgattacacaaac 1876512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 12002238 - 12002331
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    |||||||||||||| || ||||||||||| ||||  || |||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  12002238 tcttgttaacgagtatcctcggggcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcact 12002331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 44220843 - 44220740
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    |||||||||||||||||  ||| |||||   ||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||    
T  44220843 tcttgttaacgagtgtccccggagcacta--taagcatgttaaattaagtaattattcttttaaaatgtcaaagttttcaatttccaatgcac-tcatta 44220747  T
Q  394 cacaaac 400  Q
    |||||||    
T  44220746 cacaaac 44220740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 14017007 - 14016909
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcact 387  Q
    |||| |||||||||| |||| || |||||||||| |||| |||||||||| ||||||| ||||||| ||||| | ||||||| ||||||||||||||||    
T  14017007 aaggttcttgttaactagtgcctccggggcactctttaagcatgctaaataaagtaatgattctttcaaaatttaaaagttttcaatttccaatgcact 14016909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 31844352 - 31844247
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||| |  | |||||||| ||||| || ||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||||| ||||    
T  31844352 tcttgttaacgagtgccc-cagggcactctttaaatattctaaattaagtaattattccttaaaaaagtcaaagttttgaatttccaatgcacttcatta 31844254  T
Q  394 cacaaac 400  Q
     ||||||    
T  31844253 tacaaac 31844247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 1445271 - 1445163
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagt-ttcaatttccaatgcacttaa 390  Q
    ||||||||||||||||||||| |||  ||||| |||| | | ||||||||||||||   ||||||| ||||||||||| |||||||| |||||||||| |    
T  1445271 ggatcttgttaacgagtgtct-cggatcactctttaagctttctaaattaagtaatatctctttaataatgtcaaagtgttcaattttcaatgcacttta 1445173  T
Q  391 ttacacaaac 400  Q
    ||||||||||    
T  1445172 ttacacaaac 1445163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 37564467 - 37564378
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatg 383  Q
    ||||||||||||||| ||  ||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||   ||||||||||||||    
T  37564467 tcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatg 37564378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 24869379 - 24869485
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatgcactt 388  Q
    ||||| ||||||||||||||| |   | ||||||| ||||||||||||||||||||||||||||| |||||||    |  |||||||||||||||||| |    
T  24869379 taagggtcttgttaacgagtgcccctgtggcactctttaaacatgctaaattaagtaattattctctaaaaat----atttttcaatttccaatgcac-t 24869473  T
Q  389 aattacacaaac 400  Q
    ||||||| ||||    
T  24869474 aattacataaac 24869485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 18842386 - 18842314
Alignment:
Q  299 gttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||||| | |||||  |||| |||| |||  |||||||||||||||||||||||||||||||||||||    
T  18842386 gttaacgagtgccctcgggatactctttaaccattttaaattaagtaattattctttaaaaatgtcaaagttt 18842314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 35501203 - 35501097
Alignment:
Q  294 atcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttc-aatttccaatgcacttaatt 392  Q
    |||||||||||||||| || || | ||||| |||||||| ||| ||| |||||||| ||||| ||||| | |||||||  |||||||||||||||| |||    
T  35501203 atcttgttaacgagtg-ctccgtgacactctttaaacattctacatttagtaattaatctttgaaaatattaaagtttttaatttccaatgcactttatt 35501105  T
Q  393 acacaaac 400  Q
    ||||||||    
T  35501104 acacaaac 35501097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 38047744 - 38047639
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaatta 393  Q
    |||| |||||||||||| | |||| |||| |||| ||| ||||||||||||||| ||||||| ||||||| ||| ||| |||||  ||||||||| ||||    
T  38047744 tcttattaacgagtgtcct-ggggtactctttaagcattctaaattaagtaatttttctttataaatgtcaaaaattttaatttttaatgcactttatta 38047646  T
Q  394 cacaaac 400  Q
    |||||||    
T  38047645 cacaaac 38047639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 40629072 - 40628997
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||| |||||||||||||||||| |||||||||| |||| ||| |||||||||| ||| | |||||||||||    
T  40629072 ttaaacatgttaaattaagtaattattcattaaaaatgttaaagtttttaatttccaattcac-tgattacacaaac 40628997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 41960114 - 41960011
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttcaa-tttccaatgcacttaatta 393  Q
    |||||||||||||||||| ||| |||||| |    ||| ||| ||| |||||||||||||||||||||| ||||||| ||  ||||||||||||| ||||    
T  41960114 tcttgttaacgagtgtctccggagcactcttg---cattctacatttagtaattattctttaaaaatgttaaagttttaagcttccaatgcactttatta 41960018  T
Q  394 cacaaac 400  Q
     ||||||    
T  41960017 tacaaac 41960011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 29487197 - 29487130
Alignment:
Q  293 gatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||||||||||| | | |||||||| || || || |||||||||| ||||||||||||||||    
T  29487197 gatcttgttaacgagtgtttccagggcactcttttaatattctaaattaagaaattattctttaaaaa 29487130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 7627980 - 7627906
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||||||||| | | || | ||||| ||||||||| ||||||||||||||||| || |||||||| |||||||    
T  7627980 ttgttaacgagtatttccgagacactctttaaacatgttaaattaagtaattatttttaaaaaatgtgaaagttt 7627906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 1773937 - 1773843
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa---gtttcaatttccaatgcact 387  Q
    ||||||||||||||| || ||||||| || |||| | | ||||||||||| |||||| ||| |||||||||||    |||||||||||||||||||    
T  1773937 tcttgttaacgagtgcctccggggcagtctttaagctttctaaattaagttattatt-ttttaaaatgtcaaacttttttcaatttccaatgcact 1773843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 400
Target Start/End: Original strand, 20522920 - 20523020
Alignment:
Q  300 ttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaa 398  Q
    ||||||||| ||| || | ||| | |||| |||||||| ||||||||||||||||| ||||| | |||| ||||||||| |||||||| |||||||| ||    
T  20522920 ttaacgagtatctccgagacaccctttaagcatgctaagttaagtaattattctttcaaaatttaaaagttttcaattttcaatgcac-taattacataa 20523018  T
Q  399 ac 400  Q
    ||    
T  20523019 ac 20523020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 884374 - 884446
Alignment:
Q  282 attaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctt 354  Q
    |||||||||||||| |||||||||||||||   ||  ||||| ||||||||  |||||| |||||||||||||    
T  884374 attaaaataaggattttgttaacgagtgtcactggaacactctttaaacatcataaatttagtaattattctt 884446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 9004995 - 9005043
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    ||||| ||||| || |||||||||||||||||| |||||||||||||||    
T  9004995 cactctttaaatattctaaattaagtaattattttttaaaaatgtcaaa 9005043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 367
Target Start/End: Original strand, 17599231 - 17599271
Alignment:
Q  327 aaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  17599231 aaacattctaaattaagtaattattctttaaaaaagtcaaa 17599271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 44907228 - 44907283
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaa--gtttcaatttccaatgcact 387  Q
    |||||||||||||||||| |||||||||||||||   ||||||||| |||||||||    
T  44907228 ctaaattaagtaattattttttaaaaatgtcaaactttttcaattttcaatgcact 44907283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 20279697 - 20279618
Alignment:
Q  288 ataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||| |||||||||| |||| |  |||||||||| |||| ||| ||||| |||| ||||||||||| |||| ||||||    
T  20279697 ataagggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaa 20279618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 21066324 - 21066245
Alignment:
Q  288 ataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||| |||||||||| |||| |  |||||||||| |||| ||| ||||| |||| ||||||||||| |||| ||||||    
T  21066324 ataagggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaattattctttcaaaaagtcaaa 21066245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 32342831 - 32342760
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtg 154  Q
    ||||||||||||||||||| ||||||||||    | ||||||||||| |||| ||||||| ||| |||||||    
T  32342831 tttttaagtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtg 32342760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 32355318 - 32355247
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtg 154  Q
    ||||||||||||||||||| ||||||||||    | ||||||||||| |||| ||||||| ||| |||||||    
T  32355318 tttttaagtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtg 32355247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 32359436 - 32359365
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtg 154  Q
    ||||||||||||||||||| ||||||||||    | ||||||||||| |||| ||||||| ||| |||||||    
T  32359436 tttttaagtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtg 32359365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 32371972 - 32371901
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtg 154  Q
    ||||||||||||||||||| ||||||||||    | ||||||||||| |||| ||||||| ||| |||||||    
T  32371972 tttttaagtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtg 32371901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 37449533 - 37449604
Alignment:
Q  317 ggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcact 387  Q
    |||| |||||||||||  ||||||||||||||||| ||| |||||||||||  ||||||||| |||| ||||    
T  37449533 ggcattccttaaacattttaaattaagtaattatttttttaaaatgtcaaacttttcaattttcaatacact 37449604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 12782735 - 12782813
Alignment:
Q  282 attaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||||| |||| |||||||||||| ||||| |||  ||||| |||| ||| ||||| || | ||||||||||||||||    
T  12782735 attaaaaaaagggtcttgttaacgaatgtctccggaacactctttaagcatactaaaatatgcaattattctttaaaaa 12782813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 14453699 - 14453757
Alignment:
Q  342 agtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaa 399  Q
    |||||||||||  |||||||||||||| ||| ||||| |||||||||| ||||||||||    
T  14453699 agtaattattccataaaaatgtcaaagtttttaattttcaatgcactttattacacaaa 14453757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 31264959 - 31265057
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatg 383  Q
    |||| ||| ||||||||||||||| |   | ||||||| |||| |||||||||||| | | |||||||||||||| ||||||   ||||||||||||||    
T  31264959 aaattagggtcttgttaacgagtgcccctgtggcactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacaattcaatttccaatg 31265057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 39594621 - 39594548
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||||||| || |||  ||||| ||||  ||||||||||||| |||||||||||| |||| |||||||||    
T  39594621 ttgttaacgagtgcct-cggaacactctttaagaatgctaaattaagaaattattctttataaatatcaaagttt 39594548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 36348624 - 36348559
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||||| ||||| |||||||||  |||| ||  ||||| |||| ||||||||||||||||    
T  36348624 tcttgttaacgaatgtctccggggcactttttaagcacactaaaataagcaattattctttaaaaa 36348559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Complemental strand, 2376823 - 2376787
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||||| |||||||||||||||||| |||||||||    
T  2376823 taaattaaataattattctttaaaaatatcaaagttt 2376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 30158172 - 30158108
Alignment:
Q  320 actccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatg 383  Q
    |||| |||| ||| ||||||||| |||||||||||| ||||||| |||| ||| |||||||||||    
T  30158172 actctttaagcattctaaattaaataattattctttgaaaatgtaaaagtttttaatttccaatg 30158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 39644272 - 39644204
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||||||||||||||| || |||||| |||| ||| || || |||  ||||||||||| ||||    
T  39644272 ggatcttgttaacgagtgtctttggagcactctttaagcattcttaactaaaaaattattcttttaaaa 39644204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 399
Target Start/End: Original strand, 24313519 - 24313627
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaa 390  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||  |||||||||||||||||||||||| ||||||||| ||||||| || |    
T  24313519 ggatcttgttaacgagtgtcctcggggcactctttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattttcaatgcatttta 24313618  T
Q  391 ttacacaaa 399  Q
     ||||||||    
T  24313619 ctacacaaa 24313627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 29611991 - 29612097
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||| |  |||| ||||| |||||||| ||||| |||||||||||||||||||||||| | || |||||||||||||||||||| ||||    
T  29611991 tcttgttaacgagtgcccccgggacactctttaaacattctaaaataagtaattattctttaaaaatgtgacagttttcaatttccaatgcactttatta 29612090  T
Q  394 cacaaac 400  Q
    |||||||    
T  29612091 cacaaac 29612097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 45757888 - 45758005
Alignment:
Q  283 ttaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaa 381  Q
    ||||| ||||| |||||||||||||||||| |||  ||||| |||| |||| ||||||||| |||||||||||||||||||||||| ||||||||| |||    
T  45757888 ttaaattaagggtcttgttaacgagtgtctccggatcactctttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaatttacaa 45757987  T
Q  382 tgcacttaattacacaaac 400  Q
    ||||| | |||||||||||    
T  45757988 tgcac-tgattacacaaac 45758005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 286 - 400
Target Start/End: Complemental strand, 3027129 - 3027014
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgc 384  Q
    |||||||| ||||||||||||||| || ||| |||||| |||| ||| ||||||||||||||| || ||||||||| ||||| |||||| ||||||||||    
T  3027129 aaataagggtcttgttaacgagtgcctccggagcactctttaagcattctaaattaagtaatttttatttaaaaatatcaaaggtttcattttccaatgc 3027030  T
Q  385 acttaattacacaaac 400  Q
    |||| | |||||||||    
T  3027029 acttcactacacaaac 3027014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 20610098 - 20609999
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtggctccgcc 182  Q
    |||||||||||||||||||||||||||| | |   |||||||||||| |||| |||| ||  |||||||||| ||| |||||||||||||||||||||||    
T  20610098 tttttaagtgggttaatgggctattgggctgaacaaaatataaagaaagtatcgattaagctcgggcgagtgcccggggtcgtcgggtggtggctccgcc 20609999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 386
Target Start/End: Original strand, 48551004 - 48551103
Alignment:
Q  288 ataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcac 386  Q
    |||||| | |||||||||||||||  | | |||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  48551004 ataagggtgttgttaacgagtgtccccagagcactctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatgcac 48551103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 11623608 - 11623502
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagt-ttcaatttccaatgcacttaatta 393  Q
    |||||||||||||||||| |||||||||| |||| | |  |||||||||| ||  |||||||| ||||||||| | ||||||||||| |||||||| |||    
T  11623608 tcttgttaacgagtgtctccggggcactctttaagctttttaaattaagtgatatttctttaataatgtcaaaatgttcaatttccattgcacttattta 11623509  T
Q  394 cacaaac 400  Q
    |||||||    
T  11623508 cacaaac 11623502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 17036308 - 17036171
Alignment:
Q  51 gcgcttgtaaaaatattgagtttgcccaattctttt------taagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtc 144  Q
    |||| ||| |||||||||||||||||||||| ||||      ||||||||||||| ||||||||||||     |||||||||||| | || ||||||| |    
T  17036308 gcgcgtgtgaaaatattgagtttgcccaatttttttgtgttttaagtgggttaataggctattgggttggccgaaatataaagaaagaatcgattgagcc 17036209  T
Q  145 cgggcgagtgtccgaggtcgtcgggtggtggctccgcc 182  Q
    ||||||||||||||  |||| ||| |||||||||||||    
T  17036208 cgggcgagtgtccggtgtcgccggatggtggctccgcc 17036171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 20821304 - 20821380
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||| ||||| |||||||||||||||||||||| | ||| |||| |||||||||||||||| |||||||||||    
T  20821304 ttaaacattctaaactaagtaattattctttaaaaatattaaaggttttaatttccaatgcactttattacacaaac 20821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 50604024 - 50604087
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaa 358  Q
    |||||||||||||||||| | |||||||| |||| ||| |||||||||||||||||||||||||    
T  50604024 tcttgttaacgagtgtctccagggcactctttaaccattctaaattaagtaattattctttaaa 50604087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 272 - 385
Target Start/End: Original strand, 25317753 - 25317867
Alignment:
Q  272 ttaaaatgaaattaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tt 370  Q
    |||||||| || ||| | |||| ||||||||||||| | || |||| ||||| | || |||||||||| ||||||||||||||| ||||| | |||| ||    
T  25317753 ttaaaatgtaaataagaaaagggtcttgttaacgagcgcctccgggacactcttcaagcatgctaaataaagtaattattcttttaaaatttaaaagttt 25317852  T
Q  371 tcaatttccaatgca 385  Q
    |||||||||||||||    
T  25317853 tcaatttccaatgca 25317867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 40614356 - 40614295
Alignment:
Q  340 taagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||    
T  40614356 taagtaattattctttaaaaatgtcaatgttttcaattttcaatgcactttattacacaaac 40614295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 12140146 - 12140205
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatg 383  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  12140146 ttaagcatgctaaattaaataattattcttttaaaatgtcaaagttttcaatttccaatg 12140205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 399
Target Start/End: Original strand, 46725622 - 46725733
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatg-tcaaagtttcaatttccaatgcact 387  Q
    ||||| |||| ||||||||||||  ||||  |||| |||| ||| |||||||||||| ||||| | |||||||| | ||| ||||||||| |||||||||    
T  46725622 taagggtcttattaacgagtgtccacgggatactctttaagcattctaaattaagtagttattttataaaaatgttaaaattttcaattttcaatgcact 46725721  T
Q  388 taattacacaaa 399  Q
    | ||||||||||    
T  46725722 ttattacacaaa 46725733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 383
Target Start/End: Complemental strand, 54290918 - 54290823
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatg 383  Q
    ||||| |||||||||||||| ||  |||||||||| |||| |||| ||||||| | | |||||||||||||| ||||||   ||||||||||||||    
T  54290918 taagggtcttgttaacgagtatccccggggcactctttaagcatgataaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatg 54290823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 14146107 - 14146176
Alignment:
Q  331 atgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||||||| |||  ||||||||||| |||||||||| ||||||| | |||||||||||    
T  14146107 atgctaaattaagtaattattttttttaaatgtcaaagttttcaatttctaatgcac-tgattacacaaac 14146176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 28692035 - 28691954
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||| ||||||||  ||||||||||||||||||||| ||||||| |||| |||||||||| ||| ||  |||||||||||||    
T  28692035 cactctttaaacatattaaattaagtaattattcttttaaaatgttaaagttttcaatttctaataca-ataattacacaaac 28691954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 37359477 - 37359543
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||||  ||||||||| |||| ||||||||| |||| ||||| |||||||||||    
T  37359477 taaattaagtaattattccataaaaatgttaaagttttcaattttcaattcactttattacacaaac 37359543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 39651902 - 39651964
Alignment:
Q  293 gatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattcttt 355  Q
    |||||||||||| |||||||| | |||| || ||||||||  |||||||||||||||||||||    
T  39651902 gatcttgttaactagtgtcttggaggcagtctttaaacattttaaattaagtaattattcttt 39651964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 38101390 - 38101341
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatgc 384  Q
    ||||||||||||||||||||| ||||| | ||||||||||||| ||||||    
T  38101390 taaattaagtaattattcttttaaaatataaaagtttcaattttcaatgc 38101341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 37388403 - 37388482
Alignment:
Q  320 actccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaa 399  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||| |||  ||||| ||| ||||||| || ||||||||||    
T  37388403 actctttaaatatgttaaattaagtaattattctttaaaaatgtgaaatttttcagttttcaatgca-ttgattacacaaa 37388482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 50368537 - 50368469
Alignment:
Q  299 gttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||||||||||||  ||||| || ||||| ||  |||| ||||||||||||||||||||| ||||||    
T  50368537 gttaacgagtgtctttagggcattctttaaagattttaaaataagtaattattctttaaaaaagtcaaa 50368469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 54911192 - 54911248
Alignment:
Q  315 ggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||| || |||||||| ||||||||| |||||||||||| ||||||| |||||||    
T  54911192 ggggcaatctttaaacattctaaattaaataattattcttttaaaatgttaaagttt 54911248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 22772855 - 22772922
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgca 385  Q
    ||||| |||||||| | |||||||||||||||||  ||| ||| |||||| |||||||||||||||||    
T  22772855 cactctttaaacattccaaattaagtaattattccataacaatttcaaagttttcaatttccaatgca 22772922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 43135275 - 43135204
Alignment:
Q  71 tttgcccaattctttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgag 142  Q
    ||||||||||| ||||||||||||||||||| ||||||  ||  | || |||||||||| |||| |||||||    
T  43135275 tttgcccaattttttttaagtgggttaatggactattgcattgggccatatataaagaaagtatcgattgag 43135204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 16678898 - 16678971
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||||||| ||||||  ||||| |||||||  |||||| ||||||||||||||| ||||| | |||||||    
T  16678898 ttgttaacgagtgccttcgga-cactctttaaacactctaaataaagtaattattcttttaaaatataaaagttt 16678971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 37382971 - 37383033
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtcc 145  Q
    ||||||||||||||||||||||||||||||    || ||||| |||| |||| ||||||||||    
T  37382971 tttttaagtgggttaatgggctattgggttggaccatatatacagaaagtatcgattgagtcc 37383033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 12908923 - 12908850
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcacttaattacaca 397  Q
    ||||||||  ||||| ||||||||||| ||||||||  ||||| ||| ||||||  ||||||||||||||||||    
T  12908923 ttaaacattttaaataaagtaattattttttaaaaaaatcaaaattttcaatttttaatgcacttaattacaca 12908850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 25461442 - 25461529
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa--gtttcaatttccaa 381  Q
    ||||||||||||||| || |||||||||| ||||||||   ||| ||||  ||||||||||||||| ||||||   |||||||||||||    
T  25461442 tcttgttaacgagtgcct-cggggcactctttaaacattgcaaaataagccattattctttaaaaaagtcaaaatatttcaatttccaa 25461529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 39973857 - 39973954
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgca 385  Q
    |||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||    
T  39973857 taagtatcttgttaacgagtgtctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgca 39973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 400
Target Start/End: Original strand, 16113881 - 16113995
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgc 384  Q
    |||||||| ||||||||||||||| || |||||||||| |||| ||| ||| |||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  16113881 aaataagggtcttgttaacgagtgcctccggggcactctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgc 16113980  T
Q  385 acttaattacacaaac 400  Q
    || | |||||||||||    
T  16113981 ac-tgattacacaaac 16113995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 384
Target Start/End: Complemental strand, 35259185 - 35259091
Alignment:
Q  291 aggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgc 384  Q
    ||||||||||||||||||| | ||||||||||| ||||  ||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||    
T  35259185 aggatcttgttaacgagtgccctcggggcactctttaagtatgctaaattaagaaattattttttaaaaatgtaaaagttttcaatttccaatgc 35259091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 3047833 - 3047929
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgca 385  Q
    |||| ||||||||| ||||| |  |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||  |||| ||||||||||||    
T  3047833 aagggtcttgttaaagagtgcccccggggcactctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgca 3047929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 42573902 - 42573811
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    |||||||| |||| || |||||||||| |||| |||||||||||||||||||||||||| ||||||| || | ||||||||| |||||||||    
T  42573902 ttgttaacaagtgcctccggggcactctttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattttcaatgcact 42573811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 48947177 - 48947268
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    ||||||||||||| |   |||||| || |||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  48947177 ttgttaacgagtgcccctggggcattctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcact 48947268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 31807915 - 31807809
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||| |  ||| |||||  |||| ||| ||||| |||||||||||||||||||||||| | || ||||||||| |||||||||| ||||    
T  31807915 tcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaattattctttaaaaatgtgatagttttcaattttcaatgcactttatta 31807816  T
Q  394 cacaaac 400  Q
    |||||||    
T  31807815 cacaaac 31807809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 35543538 - 35543433
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||| ||| || |||||  |||| |||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||  | |||||||    
T  35543538 tcttgttaacgagtgcctttggagcactatttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaatttccaatata-ttaatta 35543440  T
Q  394 cacaaac 400  Q
    |||||||    
T  35543439 cacaaac 35543433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 34861347 - 34861254
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcact 387  Q
    ||||||||||||||| |   ||||||||| |||| ||| |||||||||||||||||| |||||||||||||||  |||||||||||||| ||||    
T  34861347 tcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttccaatacact 34861254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 31042972 - 31043077
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    |||||||||||| ||||  |||  || || |||| ||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||| || ||||    
T  31042972 tcttgttaacgaatgtccccggcacagtctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgca-ttgatta 31043070  T
Q  394 cacaaac 400  Q
    |||||||    
T  31043071 cacaaac 31043077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 48997 - 48929
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcac 386  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||| |||| ||||||||| ||||||||    
T  48997 cactcgttaatcatgctaaattaagtaattattcttgaaaaatgtaaaagttttcaattttcaatgcac 48929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 26273629 - 26273721
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtgg 175  Q
    ||||||||| ||||||| ||||||||||||  | || |||||||||| |||| |||| ||| |||||||||||||  ||||||||| ||||||    
T  26273629 tttttaagttggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgtccagggtcgtcggatggtgg 26273721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 290601 - 290667
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| | |||||||||||    
T  290601 ctaaattaagtaattattcttttaaaatgtcaaagttttcaatttacaatgcac-tgattacacaaac 290667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 40053264 - 40053369
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||||||   | |||||  |||| ||| |||||||| |||||| ||||||||||||||||||| ||||||||| |||| || || ||||    
T  40053264 tcttgttaacgagtgtctctagtgcactttttaagcattctaaattaggtaattgttctttaaaaatgtcaaagttttcaattttcaataca-tttatta 40053362  T
Q  394 cacaaac 400  Q
    |||||||    
T  40053363 cacaaac 40053369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 33791838 - 33791786
Alignment:
Q  331 atgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaat 382  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  33791838 atgctaaattaagtaattattcttttaaaatgtcaaatttttcaatttccaat 33791786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 51904664 - 51904614
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgc 384  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  51904664 taaattaagtaattattcttttaaaatgttaaagttttcaatttccaatgc 51904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 400
Target Start/End: Complemental strand, 27934839 - 27934758
Alignment:
Q  320 actccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaac 400  Q
    |||| |||| ||| ||||||||| |||||||| ||||||||| ||||| |||||||||| |||| || || |||||||||||    
T  27934839 actctttaagcattctaaattaaataattattatttaaaaatatcaaaagtttcaattttcaatacaatttattacacaaac 27934758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 398
Target Start/End: Original strand, 1656447 - 1656511
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaattacacaa 398  Q
    |||||||| |||||||| |||||||||||| ||| ||||||||||||||||| || | |||||||    
T  1656447 taaattaaataattattttttaaaaatgtcaaaattttcaatttccaatgcattttaatacacaa 1656511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 49478783 - 49478889
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa--gtttcaatttccaatgcacttaatt 392  Q
    ||||||||||||||||||  || | |||| |||| |||| | | ||||||||||||| |||  ||||||||||   |||||||||||||||||| | |||    
T  49478783 tcttgttaacgagtgtctctggagtactctttaagcatgttgagttaagtaattattttttttaaatgtcaaaagttttcaatttccaatgcac-tgatt 49478881  T
Q  393 acacaaac 400  Q
    ||||||||    
T  49478882 acacaaac 49478889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 2864108 - 2864179
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||| |||||||||||||||||  |||| ||||| |||||||| | | ||| || ||||||||||||||||    
T  2864108 taagggtcttgttaacgagtgtccccgggacactctttaaacatcccatatttaggaattattctttaaaaa 2864179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 5251031 - 5250964
Alignment:
Q  300 ttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||||||| || ||| |||||| |||||||| |||||||| | | |||||||||||||| ||||||    
T  5251031 ttaacgagtgcctccggagcactctttaaacatactaaattaggaagttattctttaaaaaagtcaaa 5250964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 39150553 - 39150612
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctt 354  Q
    ||||||||||||||| |  |||||||||| |||| ||| ||||||| |||||||||||||    
T  39150553 tcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattctt 39150612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 39912356 - 39912273
Alignment:
Q  284 taaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    ||||| |||| ||||||||||||||| |  |||| ||||| |||| |||||||||||| | | ||||| |||||||| ||||||    
T  39912356 taaaaaaagggtcttgttaacgagtgcccccgggacactctttaagcatgctaaattaggaagttattatttaaaaaagtcaaa 39912273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 46592614 - 46592532
Alignment:
Q  284 taaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    ||||| |||||| |||||||||||||| | | ||| |||| |||| |||||||||||| | | |||||||||||||| ||||||    
T  46592614 taaaacaaggattttgttaacgagtgt-tacagggtactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaa 46592532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 47031457 - 47031520
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||| ||| |||||| ||||| |||||||| ||||| |||||||||||| ||| ||||    
T  47031457 ttgttaacgattgttttcgggacactctttaaacattctaaaataagtaattatttttttaaaa 47031520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 1048807 - 1048739
Alignment:
Q  291 aggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||||||||||| |||||| ||| |||||||| |||| ||| | |||||||  ||||||||||||||||    
T  1048807 aggatcttgttaatgagtgt-ttcagggcactctttaagcataccaaattaaaaaattattctttaaaaa 1048739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 8791530 - 8791469
Alignment:
Q  340 taagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||||| ||||||||||||| |||| ||||||||| |||||| ||| ||||| |||||    
T  8791530 taagtaattagtctttaaaaatgtaaaagttttcaattttcaatgccctttattacgcaaac 8791469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 32787351 - 32787286
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaagt-ttcaatttccaatgcacttaattacacaaa 399  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||| | ||| || || ||||||||||    
T  32787351 taaattaagtaattaatctttaaaaatgttaaagtgttcaattcctaatacattttattacacaaa 32787286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 33330812 - 33330735
Alignment:
Q  104 tattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtggctccgc 181  Q
    |||||||||  ||| | ||||||||| |||| |||||||  |||||||||  ||| ||||||||||||||| ||||||    
T  33330812 tattgggttgggtctagtataaagaaagtatcgattgagctcgggcgagtacccggggtcgtcgggtggtgtctccgc 33330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 40286853 - 40286922
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcact 387  Q
    ||||| |||| |||||||||| |||| |||||||||| |||||   ||||||| ||||||||||||||||    
T  40286853 cactctttaagcatgctaaataaagtcattattctttcaaaattaaaaagttttcaatttccaatgcact 40286922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 759332 - 759256
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttc-aatttccaatgcacttaattacacaaac 400  Q
    |||| ||| ||||||||| |||| |||   ||||| |||||||||||| |||||||||| ||||| |||||||||||    
T  759332 ttaagcattctaaattaaataatcatttcataaaattgtcaaagtttccaatttccaatacactttattacacaaac 759256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 351
Target Start/End: Original strand, 17112674 - 17112730
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattatt 351  Q
    ||||||||||||||| ||||| ||||||| |||| ||||  ||| ||||||||||||    
T  17112674 tcttgttaacgagtgccttcgaggcactctttaagcatggcaaaataagtaattatt 17112730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 44452153 - 44452071
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaattacacaaac 400  Q
    ||||| |||||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||    
T  44452153 cactctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgcactttattacacaaac 44452071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 400
Target Start/End: Complemental strand, 34299899 - 34299773
Alignment:
Q  274 aaaatgaaattaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttc 372  Q
    ||||| ||| ||||| |||| ||||||||||||||| |  |||||||||  |||| ||||||| |||||| |||||||||||||||||||||||| ||||    
T  34299899 aaaattaaaataaaaaaagggtcttgttaacgagtgcccccggggcactttttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttc 34299800  T
Q  373 aatttccaatgcacttaattacacaaac 400  Q
    ||||| ||| |||| | |||||||||||    
T  34299799 aatttacaaagcac-tgattacacaaac 34299773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 43492314 - 43492231
Alignment:
Q  318 gcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcacttaattacacaaac 400  Q
    |||||| |||| ||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||    
T  43492314 gcactctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgcactttattacacaaac 43492231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 19619993 - 19620056
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19619993 ttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaatttccaatgcact 19620056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 14088782 - 14088690
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtgg 175  Q
    ||||| ||||||||||||||||| |||||| || || |||||||||| |||| ||||||| |||||| |||| ||| ||||| ||||||||||    
T  14088782 tttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 14088690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 14398800 - 14398708
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtgg 175  Q
    ||||| ||||||||||||||||| |||||| || || |||||||||| |||| ||||||| |||||| |||| ||| ||||| ||||||||||    
T  14398800 tttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 14398708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 5482506 - 5482452
Alignment:
Q  331 atgctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatgca 385  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  5482506 atgctaaattaagtaattattcttttaaaatgtcaaagttttcatttccaatgca 5482452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 6770580 - 6770431
Alignment:
Q  40 ttcttgagcatgcgcttgtaaaaatattgagtttgcccaattct-------ttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggt 132  Q
    |||||| || ||||| ||| |||||||||||||||||||||| |       ||||||||||||||||||||||||  |||  |  ||||||||||||  |    
T  6770580 ttcttgtgcgtgcgcgtgtgaaaatattgagtttgcccaattttgtattttttttaagtgggttaatgggctatttagttgggaaaaatataaagaaaat 6770481  T
Q  133 attgattgagtccgggcgagtgtccgaggtcgtcgggtggtggctccgcc 182  Q
    |||||||||| || ||| | || ||| ||||| |||||||||| ||||||    
T  6770480 attgattgagcccaggcaaatgcccggggtcgccgggtggtggttccgcc 6770431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 8237960 - 8238026
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| | |||||||||||    
T  8237960 ctaaattaagtaattattctttaaaaatgtcaaagttttcatttttcaatgcac-tgattacacaaac 8238026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 400
Target Start/End: Complemental strand, 3267757 - 3267640
Alignment:
Q  283 ttaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaa 381  Q
    ||||||||| | |||||||||   |||||| |||| ||||| |||| |||||||||| ||||||||||||||| ||||| | |||| |||| |||| |||    
T  3267757 ttaaaataaaggtcttgttaataggtgtctccgggacactctttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttccattttcaa 3267658  T
Q  382 tgcacttaattacacaaac 400  Q
    ||||| | |||||||||||    
T  3267657 tgcac-tcattacacaaac 3267640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 31498770 - 31498688
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||||||||||||||||||  | ||  |||||| |||||||| ||||||||||||| |||| ||| ||||||| |||||||    
T  31498770 taaggatcttgttaacgagtgcttccgttgcactctttaaacattctaaattaagtaaatatttttttaaaatgttaaagttt 31498688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 25491775 - 25491827
Alignment:
Q  123 taaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtgg 175  Q
    ||||||| |||| ||||||||||||||||||||| ||||||| ||||||||||    
T  25491775 taaagaaagtatcgattgagtccgggcgagtgtctgaggtcgccgggtggtgg 25491827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 400
Target Start/End: Original strand, 46716173 - 46716255
Alignment:
Q  318 gcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||| |||| ||| ||||||||| |||||||||||||||||| |||||| ||||||| | ||||||| ||||||| ||||||    
T  46716173 gcactctttaaccattctaaattaaataattattctttaaaaatatcaaagttttcaatgttcaatgca-ttaattatacaaac 46716255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 38988680 - 38988778
Alignment:
Q  298 tgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagt-ttcaatttccaatgcacttaattaca 395  Q
    |||||||||||||||| ||  ||||| |||| | |  ||||||||||||| ||| ||||| ||||| ||||| || |||||||||||||||| ||||||    
T  38988680 tgttaacgagtgtctttggaacactcattaagctttttaaattaagtaataattttttaataatgttaaagtgtttaatttccaatgcactttattaca 38988778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 25176423 - 25176330
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcact 387  Q
    |||||||||||| ||||    |||||||| ||||||||| |||||||  |||||||||||| |||||||||||  ||||||||||  |||||||    
T  25176423 tcttgttaacgaatgtccctagggcactctttaaacatgttaaattagataattattcttttaaaatgtcaaatttttcaatttctgatgcact 25176330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 24610943 - 24610868
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||||  ||||||||||| ||||||| |||| ||| |||||| ||| ||| |||||||||||||    
T  24610943 ttaaacatgctaaattaaacaattattcttttaaaatgttaaagttttgaatttctaattcac-taattacacaaac 24610868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 26872890 - 26872814
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaac 400  Q
    |||| ||| |||||| ||||||||||| |||| |||| ||||| |||||||||||||||||| || |||| ||||||    
T  26872890 ttaagcattctaaatcaagtaattattatttataaatatcaaaagtttcaatttccaatgcattttattatacaaac 26872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 24299236 - 24299173
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcact 387  Q
    |||| |||| ||||||||| |||||||| ||||||||||||||  ||| |||||||||||||||    
T  24299236 ttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttccaatgcact 24299173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 25037060 - 25036994
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||| |||||||| ||| ||| ||| ||||| |||||||||| ||| |||||||    
T  25037060 taaattaagtaattattatttaaaaaggtcaaaatttttaattttcaatgcactttattgcacaaac 25036994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 26871745 - 26871818
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||||||||||||  ||| |||||  |||| |||||||||| ||||||||||||||| ||||| | |||||||    
T  26871745 ttgttaacgagtgtcc-cggagcactatttaagcatgctaaataaagtaattattcttttaaaatttaaaagttt 26871818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 37135527 - 37135461
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||||| ||||||||| || ||||||| ||||| |||| ||||| | |||||||||    
T  37135527 taaattaagtaattattatttaaaaatatcaaaagttttaattttcaatacactttactacacaaac 37135461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 27338233 - 27338298
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||| |||||||||  | ||||||||| |||| ||||||||||||   ||||||||||||||||    
T  27338233 tcttgtgaacgagtgttcttggggcactctttaagcatgctaaattagaaaattattctttaaaaa 27338298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 35599937 - 35599872
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||||||||||||| || || |  |||| |||||||| |||||||| | ||||||||||||||||    
T  35599937 tcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaa 35599872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 41150110 - 41150057
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||  |||||||||    
T  41150110 taaattaagtaattattctttaaaagtgttaaagatttcaattcacaatgcact 41150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 23015779 - 23015715
Alignment:
Q  291 aggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattcttt 355  Q
    ||||||||||||| ||||| || ||| ||| || |||||||| | ||||| ||||||||||||||    
T  23015779 aggatcttgttaatgagtgcctccggagcattctttaaacataccaaatttagtaattattcttt 23015715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 27123245 - 27123348
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaa-agtttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||| |  |||||||||| |||| ||| | ||||| |||||| ||||||| |||| |||||   || |||||||||||||| |||| ||    
T  27123245 tcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgca-ttaagta 27123343  T
Q  394 cacaa 398  Q
    |||||    
T  27123344 cacaa 27123348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 28770448 - 28770508
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattcttt 355  Q
    ||||||||||||||| || |||||||||| |||| ||| | ||| | ||||||||||||||    
T  28770448 tcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaattattcttt 28770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 36282448 - 36282504
Alignment:
Q  86 ttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgag 142  Q
    |||||||||||||||||||||||| ||  | ||||||| ||||| |||| |||||||    
T  36282448 ttaagtgggttaatgggctattggattgggccaaatatgaagaaagtatcgattgag 36282504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 24389766 - 24389668
Alignment:
Q  287 aataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgc 384  Q
    ||||||| |||||||||| ||| ||  |||||||||| |||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  24389766 aataagggtcttgttaacaagtatccacggggcactctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttccaatgc 24389668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 6334805 - 6334716
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgca 385  Q
    ||||||||||||||| ||||  ||||| ||||||||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||    
T  6334805 ttgttaacgagtgtcctcggaacactctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatgca 6334716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 30869700 - 30869604
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    ||||||||||||||||||||||| | |||||||| |||| |||||||||||||  | ||||||||||||||||| |||| |||||||||| ||| ||||    
T  30869700 aaggatcttgttaacgagtgtctccagggcactctttaagcatgctaaattaa--atttattctttaaaaatgttaaagttttcaatttctaatacact 30869604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 12848606 - 12848502
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaatta 393  Q
    |||||||||| ||||| | |||||||||| |||| |||  |||||||||||| |||||||||| |||||||||| |||||||||||| ||||| ||||||    
T  12848606 tcttgttaacaagtgt-tccggggcactctttaagcatattaaattaagtaactattctttaataatgtcaaagttttcaatttccattgcac-taatta 12848509  T
Q  394 cacaaac 400  Q
    |||||||    
T  12848508 cacaaac 12848502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 386
Target Start/End: Complemental strand, 29685839 - 29685747
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtt-tcaatttccaatgcac 386  Q
    ||||||||||||||| || ||| |||||| ||||||||||||||| ||||||||||||||| ||||| | |||||| ||||||| ||| ||||    
T  29685839 tcttgttaacgagtgcctccggagcactctttaaacatgctaaataaagtaattattctttcaaaatttaaaagttctcaattttcaacgcac 29685747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 19952521 - 19952624
Alignment:
Q  71 tttgcccaattctttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggt 170  Q
    |||||| |||| ||||||| |||||||||||||||||| | |  |||| ||||||||||  ||| |||||||||| |||||||||| | ||||| |||||    
T  19952521 tttgcctaattttttttaattgggttaatgggctattgaggtgggtcatatataaagaaaatatcgattgagtccaggcgagtgtctggggtcgccgggt 19952620  T
Q  171 ggtg 174  Q
    ||||    
T  19952621 ggtg 19952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 400
Target Start/End: Complemental strand, 431769 - 431663
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatg-tcaaagtttcaatttccaatgcacttaatta 393  Q
    ||||||||||||||| |  | ||  |||| ||||| || ||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||  |||    
T  431769 tcttgttaacgagtgcccccaggatactctttaaatattctatattaagtaattattctttaaaaatgttaaaattttcaatttccaatgcactttttta 431670  T
Q  394 cacaaac 400  Q
    |||||||    
T  431669 cacaaac 431663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 6411509 - 6411420
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatg 383  Q
    |||||||||||||||| | | | |||||  ||||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||    
T  6411509 tcttgttaacgagtgtttccagagcactttttaaacatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatg 6411420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 3074070 - 3074145
Alignment:
Q  314 cggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag--tttcaatttccaatgcact 387  Q
    |||||||||| |||| |||| |||||||||||||||||| || ||||| ||||||  |||||||||||||||||||    
T  3074070 cggggcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgcact 3074145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 3882587 - 3882659
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    ||||||||||||||| | ||||||||||| |||| ||| ||||| |||| |||||||||||||||| ||||||    
T  3882587 tcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaa 3882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 30822854 - 30822764
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgca 385  Q
    |||||||||||||||| ||||| |||||| | || | |  ||||||||||||||||| ||| |||||||||||| |||||||||||||||||    
T  30822854 tcttgttaacgagtgt-ttcggagcactcttaaagctttttaaattaagtaattattttttgaaaatgtcaaagttttcaatttccaatgca 30822764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 565833 - 565722
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaat--tattctttaaaaatgtcaaag-tttcaatttccaatgcac 386  Q
    |||| |||||||||||||||||  || |  |||| |||| |||||||||||||||||   |||||||||||||||| |||| ||||||||||| ||||||    
T  565833 aagggtcttgttaacgagtgtcc-cgagatactctttaagcatgctaaattaagtaaaagtattctttaaaaatgtgaaagttttcaatttcctatgcac 565735  T
Q  387 ttaattacacaaac 400  Q
     |||||||||||||    
T  565734 -taattacacaaac 565722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 383
Target Start/End: Original strand, 32859756 - 32859845
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatg 383  Q
    ||||||||||||||| |  | |||||||| ||||||||||||||||| | | |||||||||||||| ||||||   ||||||||||||||    
T  32859756 tcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatg 32859845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 33068642 - 33068585
Alignment:
Q  331 atgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||||    
T  33068642 atgctaaattaagtaattattttttaaaaatgtgaaagttttcaatttctaatgcact 33068585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 8964393 - 8964467
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaa 399  Q
    |||| ||| ||||||||||||||||||||||||||| || |||  ||||||||||||||||| || ||||||||||    
T  8964393 ttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgca-ttgattacacaaa 8964467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 9049255 - 9049181
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaa 399  Q
    |||| |||| ||||||||||||||||||||| ||||||| |||  ||||||||| ||||||| |||||||||||||    
T  9049255 ttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattttcaatgca-ttaattacacaaa 9049181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 28858076 - 28858162
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaat 382  Q
    |||| ||||| ||||| ||||| ||| || |||| ||| ||||||||||||| |||||||||||||||||||| ||| ||||| ||||    
T  28858076 tcttattaactagtgt-ttcggagcattctttaagcattctaaattaagtaaatattctttaaaaatgtcaaatttttaattttcaat 28858162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 33454964 - 33455015
Alignment:
Q  320 actccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||| |||| |||||||||||||| || ||||||||||||||||||||||||    
T  33454964 actctttaagcatgctaaattaagaaactattctttaaaaatgtcaaagttt 33455015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 1335024 - 1334954
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||| |||||||||||||| ||| |||||||||| |||| ||| | ||||| | |||||||||||||||||    
T  1335024 aagggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattattctttaaaaa 1334954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 30523014 - 30523079
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||| ||||| |||||||| |||||||||| ||||||||||||||| || |||||||||||||    
T  30523014 taaattaaataatttttctttaacaatgtcaaagttttcaatttccaatgtac-taattacacaaac 30523079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 7886774 - 7886875
Alignment:
Q  50 tgcgcttgt-aaaaatatt-gagtttgcccaattctttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgg 147  Q
    ||||||||| ||||||||| ||||||| ||| || ||||||||| ||||||| || ||||||||| | |  ||||||||||| |||| |||||||| |||    
T  7886774 tgcgcttgtgaaaaatatttgagtttgtccatttttttttaagtaggttaataggttattgggttgaatttaatataaagaaagtatcgattgagttcgg 7886873  T
Q  148 gc 149  Q
    ||    
T  7886874 gc 7886875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 12762965 - 12762913
Alignment:
Q  336 aaattaagtaattattctttaaaaatg-tcaaagtttcaatttccaatgcact 387  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||    
T  12762965 aaattaagtaattattcttaaaaaatgttaaaattttcaatttccaatgcact 12762913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 18227093 - 18227165
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||||||||||||||| |||  ||||| ||||||||  |||| ||||||||||||||| | ||| ||||||    
T  18227093 tcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaa 18227165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 391
Target Start/End: Complemental strand, 19890335 - 19890227
Alignment:
Q  284 taaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaa-agtttcaatttccaat 382  Q
    |||||| ||| | |||||||||||||| | ||||| |||  |||| ||| ||||||| |||||||||||||| |||| |||||   || |||||||||||    
T  19890335 taaaattagggttttgttaacgagtgtttccggggtactatttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaat 19890236  T
Q  383 gcacttaat 391  Q
    ||| |||||    
T  19890235 gcatttaat 19890227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 44188569 - 44188669
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtggctccgcc 182  Q
    |||||||||| |||||||| | |||||||| |  | |||||||||||  ||| |||| || ||||| |||||||| || ||||||||||||  |||||||    
T  44188569 tttttaagtgagttaatggacaattgggttgaacctaatataaagaaaatatcgattaagcccgggtgagtgtccaagatcgtcgggtggtatctccgcc 44188668  T
Q  183 t 183  Q
    |    
T  44188669 t 44188669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 14102438 - 14102379
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattatt 351  Q
    |||||||||||||||||| || ||| |||||| |||||||||| ||| |||| |||||||    
T  14102438 ggatcttgttaacgagtgcctccggagcactctttaaacatgccaaaataagaaattatt 14102379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 363
Target Start/End: Original strand, 40874775 - 40874854
Alignment:
Q  284 taaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgt 363  Q
    ||||| |||| | |||||||||||| ||  |||| ||||| |||||| |  ||||||||||||||||| |||||||||||    
T  40874775 taaaaaaagggttttgttaacgagtatccacgggacactctttaaactttttaaattaagtaattattttttaaaaatgt 40874854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 8086940 - 8086994
Alignment:
Q  309 gtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgt 363  Q
    |||||||||||| ||| |||||||  |||||||| |||||||| |||||||||||    
T  8086940 gtcttcggggcattccgtaaacattttaaattaaataattattttttaaaaatgt 8086994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 11385447 - 11385529
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaac 400  Q
    ||||| ||||| || |||||| ||||||||||||||||||| | |||||  |||| ||||||||| ||||| || ||||||||    
T  11385447 cactctttaaatattctaaatcaagtaattattctttaaaattatcaaatttttctatttccaatacactttataacacaaac 11385529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 399
Target Start/End: Original strand, 12205485 - 12205595
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcactt 388  Q
    |||||||||||||||||||||  ||    || || ||||| ||  ||||||||||||||||| |||| |||| |||||| |||| |||| |||||||| |    
T  12205485 aaggatcttgttaacgagtgtactctatacattctttaaatattttaaattaagtaattattttttataaatatcaaagttttccatttgcaatgcacat 12205584  T
Q  389 aattacacaaa 399  Q
     ||||||||||    
T  12205585 tattacacaaa 12205595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 24983833 - 24983787
Alignment:
Q  136 gattgagtccgggcgagtgtccgaggtcgtcgggtggtggctccgcc 182  Q
    ||||||| ||||||||||| ||||| ||| |||||||||||||||||    
T  24983833 gattgagcccgggcgagtgcccgagctcgccgggtggtggctccgcc 24983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 25622528 - 25622604
Alignment:
Q  318 gcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattaca 395  Q
    |||||| |||||||| |||||||||||||||||| ||||||||| |||||  || |||||| ||||||| |||||||||    
T  25622528 gcactctttaaacattctaaattaagtaattatt-tttaaaaatatcaaatattacaattttcaatgca-ttaattaca 25622604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 37993052 - 37993114
Alignment:
Q  298 tgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||||||||||||| || || |||||||| ||||||| | ||| |||||||| ||||    
T  37993052 tgttaacgagtgtcttcgggacattctttaaacattctaaatttaataactattctttcaaaa 37993114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 39647884 - 39647842
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaat 361  Q
    ||||| |||||||| |||||||||||||||||| |||||||||    
T  39647884 cactctttaaacattctaaattaagtaattattttttaaaaat 39647842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 45076262 - 45076198
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||| ||||||||||||  || ||||||| |||||||| ||||| |||| ||||||||||||||||    
T  45076262 tcttattaacgagtgtcc-cgaggcactctttaaacatactaaaataagcaattattctttaaaaa 45076198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 4655072 - 4655004
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcac 386  Q
    ||||| |||| ||||||||||||  |||||||| ||| ||||| |||||| ||||||||| ||||||||    
T  4655072 cactctttaagcatgctaaattagataattatttttttaaaatatcaaagttttcaattttcaatgcac 4655004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 9449091 - 9449023
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||| |||||||| |||||||||||||||| |||| ||    ||||| |||||||||||||| ||||    
T  9449091 ggatctcgttaacgaatgtcttcggggcactctttaagcaactcaaatttagtaattattcttttaaaa 9449023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 27133049 - 27133117
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtca 365  Q
    |||| ||||||||||| | | | |||| |||||||| ||||| |||| |||||||||||||||| ||||    
T  27133049 ttgtcaacgagtgtctccagagtactctttaaacatactaaaataagcaattattctttaaaaaagtca 27133117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 383
Target Start/End: Complemental strand, 37082335 - 37082247
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatg 383  Q
    ||||||||||||||||||||||| ||||  |||| ||| |   || ||| |||||||||||||||| || |||  |||||||| |||||    
T  37082335 tcttgttaacgagtgtcttcgggtcactttttaagcattccttatgaagaaattattctttaaaaaagtaaaaacttcaattttcaatg 37082247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 37285029 - 37284930
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgc 384  Q
    |||||||| |||||| ||||||||||||  |  ||||| ||||| ||  ||||||||||||||||| ||||||||| | |||  ||||||||| ||||||    
T  37285029 aaataagg-tcttgtcaacgagtgtctttagaacactctttaaatattttaaattaagtaattattttttaaaaatcttaaatttttcaattttcaatgc 37284931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 42615042 - 42615138
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtggctcc 179  Q
    ||||||||||| ||||||| |||||||||| |  ||||||||||||| |||| |||||||||||| |||||||||| ||||| |||||| |||||||    
T  42615042 tttttaagtggattaatggactattgggttgaaccaaatataaagaaagtatcgattgagtccggacgagtgtccggggtcgccgggtgatggctcc 42615138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 14309220 - 14309118
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattaca 395  Q
    ||||||||||||||  || ||| | || |||| |||  ||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  14309220 ttgttaacgagtgttctcagggtattctttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaatttccaatgca-ttaattaca 14309122  T
Q  396 caaa 399  Q
    ||||    
T  14309121 caaa 14309118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 34032231 - 34032160
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||| ||||||||||||||||| | ||||||||| |||| ||| ||||| |||||||||||||||||||||    
T  34032231 taagggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaattattctttaaaaa 34032160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 10410421 - 10410515
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtca-aagtttcaatttccaatgcactt 388  Q
    ||||||||||||||| |  |||||||||| |||||| | ||||||||||||||  || ||||||||||||| ||  |||||||||||||||||||    
T  10410421 tcttgttaacgagtgcccccggggcactctttaaactttctaaattaagtaatatttttttaaaaatgtcagaatattcaatttccaatgcactt 10410515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 1279832 - 1279747
Alignment:
Q  90 gtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtgg 175  Q
    ||||||||||||||||||| |||  |||| |||||||||| |||| |||||||||||||| | |||| |||||||  |||||||||    
T  1279832 gtgggttaatgggctattgagttgggtcatatataaagaaagtatcgattgagtccgggcaaatgtctgaggtcgctgggtggtgg 1279747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 38595030 - 38594975
Alignment:
Q  331 atgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgca 385  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||    
T  38595030 atgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgca 38594975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 17774377 - 17774312
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcacttaattacacaaa 399  Q
    ||||| ||||||||||||||||||||| |||||  |||||||||||||| ||||| ||||||||||    
T  17774377 taaatcaagtaattattctttaaaaatatcaaatttttcaatttccaatacactttattacacaaa 17774312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 367
Target Start/End: Complemental strand, 17098337 - 17098249
Alignment:
Q  279 gaaattaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||||||| || | |||||||||||||||||  |||||||||| ||||||||   ||| |||| ||||||| |||||||| ||||||    
T  17098337 gaaattaaaaaaaaggtcttgttaacgagtgtcgccggggcactctttaaacatcacaaaataagcaattattatttaaaaaagtcaaa 17098249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 36609236 - 36609161
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||| ||||||||| ||||||||||| |||||| |||||| ||||||||| ||||| || |||||||||||||    
T  36609236 ttaaacattctaaattaaataattattcttcaaaaatatcaaagttttcaattttcaatgtac-taattacacaaac 36609161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 12221433 - 12221484
Alignment:
Q  320 actccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||| |||||||| |||||||||||| ||||||||||||| |||||||||||    
T  12221433 actctttaaacatactaaattaagtagttattctttaaaattgtcaaagttt 12221484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 400
Target Start/End: Original strand, 28639570 - 28639629
Alignment:
Q  342 agtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||||||||||||||||| |||| |||||  ||||||||||||| |||||||||||    
T  28639570 agtaattattctttaaaaatgttaaagttttcagcttccaatgcactttattacacaaac 28639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 41568772 - 41568709
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    |||| ||| ||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||    
T  41568772 ttaagcatactaaattaagttattattcttcaaaaatgtcaaagttttcaattttcaatgcact 41568709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 4695067 - 4695136
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    ||||| |||| |||||||||||||  ||||||||||||||||| | |||| ||| |||||||||||||||    
T  4695067 cactctttaagcatgctaaattaaaaaattattctttaaaaatattaaagtttttaatttccaatgcact 4695136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 25438010 - 25437945
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||||||||||||| |  |||| ||||| |||| |||||||||||||| | ||||||||||||||    
T  25438010 tcttgttaacgagtgcccccgggacactctttaagcatgctaaattaagaagttattctttaaaaa 25437945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 112621 - 112561
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattcttt 355  Q
    ||||||||||||||||| ||||||||||| |||| |||  |||| | ||||||||||||||    
T  112621 tcttgttaacgagtgtcatcggggcactctttaagcatcataaaattagtaattattcttt 112561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 27325917 - 27325866
Alignment:
Q  337 aattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcact 387  Q
    ||||| |||||||||||||||||||||||||  ||||||||| |||||||||    
T  27325917 aattaggtaattattctttaaaaatgtcaaacttttcaattttcaatgcact 27325866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 779057 - 779147
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatgca 385  Q
    ||||||||||||||| |  | |||||||| |||||||| | ||| | |||||||||| ||||||||  | || ||||| ||||||||||||    
T  779057 tcttgttaacgagtgccccctgggcactctttaaacattcaaaaattagtaattattttttaaaaagttaaatgtttcgatttccaatgca 779147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 43000760 - 43000814
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcactt 388  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  43000760 taaataaagtaattattctttaaaaatgtcaaaatttttaattttcaatgcactt 43000814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 23023590 - 23023695
Alignment:
Q  281 aattaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaa-agtttcaatttcc 379  Q
    |||| |||||||| ||||||||||||||| |  |||||||||| |||| ||| |||| | ||| |||||| |  |||||| |||||  |||||||||| |    
T  23023590 aatttaaataagggtcttgttaacgagtgcccccggggcactctttaagcattctaattaaagaaattatccactaaaaaagtcaattgtttcaattttc 23023689  T
Q  380 aatgca 385  Q
    ||||||    
T  23023690 aatgca 23023695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 367
Target Start/End: Complemental strand, 25416008 - 25415927
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||||| |||||||||||||||    ||| |||||| ||||||||  |||| | ||||||||| ||||||||| ||||||    
T  25416008 aaataagggtcttgttaacgagtgctaccggcgcactctttaaacattttaaaattagtaattatactttaaaaaagtcaaa 25415927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 26686752 - 26686711
Alignment:
Q  330 catgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  26686752 catgttaaattaagtaagtattctttaaaaatgtaaaagttt 26686711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 26956483 - 26956442
Alignment:
Q  330 catgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  26956483 catgttaaattaagtaagtattctttaaaaatgtaaaagttt 26956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 385
Target Start/End: Original strand, 27016648 - 27016733
Alignment:
Q  301 taacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgca 385  Q
    ||||||||||| ||||||||||| |||| ||| | |||  ||| ||||||||  |||||| ||| ||| |||||||||||||||||    
T  27016648 taacgagtgtcatcggggcactctttaagcattccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatgca 27016733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 31914165 - 31914206
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||| |||| ||| |||||||||||||||||||||||||||    
T  31914165 cactctttaagcattctaaattaagtaattattctttaaaaa 31914206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 30104766 - 30104866
Alignment:
Q  286 aaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaa-agtttcaatttccaatgc 384  Q
    |||||||| | |||||||| |||| | ||||||||||| |||| ||| | ||||| ||||| |||| ||| |||| ||||| | || |||||||||||||    
T  30104766 aaataagggtattgttaacaagtgccctcggggcactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgc 30104865  T
Q  385 a 385  Q
    |    
T  30104866 a 30104866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 39335665 - 39335709
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgt 363  Q
    ||||| ||||||||  |||||||| ||||||||||||||||||||    
T  39335665 cactctttaaacattttaaattaaataattattctttaaaaatgt 39335709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 13445871 - 13445761
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcactt 388  Q
    |||| |||||||||||||||||  ||| |||||| |||| ||||||||||||||||| |||||||||||||||| |||| |||||||||| || |||| |    
T  13445871 aagggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaattaagtaagtattctttaaaaatgtgaaagttttcaatttcaaaagcac-t 13445773  T
Q  389 aattacacaaac 400  Q
    ||| ||||||||    
T  13445772 aatcacacaaac 13445761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 4231729 - 4231835
Alignment:
Q  76 ccaattctttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtgg 175  Q
    |||||| |||| |||||| ||||||| ||||| ||||  | ||||||||||||| |||| |||||||| |||||||||| | ||||||| ||||||||||    
T  4231729 ccaatttttttcaagtggattaatggactatttggttgggccaaatataaagaaagtatcgattgagttcgggcgagtgccggaggtcgccgggtggtgg 4231828  T
Q  176 ctccgcc 182  Q
    |||||||    
T  4231829 ctccgcc 4231835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 5704692 - 5704624
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgt 363  Q
    ||||||||| |||||||||||  |||||| ||||||||||||||||||||||||||| ||| |||||||    
T  5704692 tcttgttaatgagtgtcttcgaagcactctttaaacatgctaaattaagtaattatttttttaaaatgt 5704624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 23344581 - 23344648
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaagt-ttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||||||||  ||||||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  23344581 ctaaattaagtaatatttctttacaaatgtcaaagtgttcaatttccaatgcactttattacacaaac 23344648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 27752617 - 27752724
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaa-tttccaatgcacttaatt 392  Q
    |||| ||||| ||||||| || || |||| |||||||| |||||||||||||||||| | || ||||||||||| |||||| |||| ||||||||| |||    
T  27752617 tcttattaacaagtgtctccgaggtactctttaaacattctaaattaagtaattattttatacaaatgtcaaagttttcaattttctaatgcactttatt 27752716  T
Q  393 acacaaac 400  Q
    ||||||||    
T  27752717 acacaaac 27752724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 29716870 - 29716794
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcacttaattacacaaac 400  Q
    |||| ||| ||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  29716870 ttaagcattctaaattcagcaattatttttttaaaatgtcaaagttttcaatttccaatgcactttattacacaaac 29716794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 10364754 - 10364807
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||    
T  10364754 taaattaagtaattattctttaaaaatatcaaagttttcaatttacaatgcact 10364807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 30739572 - 30739628
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattct 353  Q
    ||||||||||||||||||||||||||| ||||  || ||||||| ||||||||||||    
T  30739572 ttgttaacgagtgtcttcggggcactctttaagtattctaaatttagtaattattct 30739628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 6418793 - 6418892
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcgtcgggtggtggctccgcc 182  Q
    ||||||||||| |||||| |||||| ||||  |  |||||||||||| || | ||||||| ||||||||||| ||||| | | |||||||||| ||||||    
T  6418793 tttttaagtggcttaatgagctatttggttgggcgaaatataaagaaagtgtcgattgagcccgggcgagtgcccgagcttgccgggtggtggttccgcc 6418892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 34552407 - 34552354
Alignment:
Q  346 attattctttaaaaatgtcaaagttt-caatttccaatgcacttaattacacaa 398  Q
    |||||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  34552407 attattctttaaaaatattaaagttttcaatttccaatgcactttattacacaa 34552354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 11721015 - 11720953
Alignment:
Q  293 gatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattcttt 355  Q
    ||||||||||||||||||||| | | ||||| |||||||| ||||||| |  |||||||||||    
T  11721015 gatcttgttaacgagtgtctttgagtcactctttaaacatcctaaatttaacaattattcttt 11720953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 2963177 - 2963210
Alignment:
Q  285 aaaataaggatcttgttaacgagtgtcttcgggg 318  Q
    |||||||||||||||||||||||| |||||||||    
T  2963177 aaaataaggatcttgttaacgagtatcttcgggg 2963210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 30509287 - 30509352
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||||||||||| |||  ||||| |||| ||| | ||| |||| ||||||||||||||||    
T  30509287 tcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaa 30509352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 49951822 - 49951733
Alignment:
Q  298 tgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcac 386  Q
    ||||||| |||| | |||||| |||| |||| |||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  49951822 tgttaactagtgccctcggggtactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaagttttcaattttcaatgcac 49951733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 23136644 - 23136549
Alignment:
Q  293 gatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcact 387  Q
    |||||||||||||||||||| ||  |||||||||||  ||  ||||||||||||||||||||| ||||| | |||| |||||||||||||||||||    
T  23136644 gatcttgttaacgagtgtctccgaagcactccttaagtatattaaattaagtaattattcttttaaaatttaaaagttttcaatttccaatgcact 23136549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 52650831 - 52650732
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcact 387  Q
    ||||| ||||||||||||||| || |||  ||||| ||||||||||||||||||| |||||||||||| ||||||| ||| ||||||||| |||| ||||    
T  52650831 taagggtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcact 52650732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 53261531 - 53261620
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgca 385  Q
    ||||||||||||| |  | || ||||| |||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||||||    
T  53261531 ttgttaacgagtgcccccaggacactctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgca 53261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 8297836 - 8297933
Alignment:
Q  289 taaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaa-agtttcaatttccaatgca 385  Q
    ||||| ||||||||||||||| |  |||||||||| |||| ||| | ||||| |||||||||||||| ||||||||||  ||| ||||||||||||||    
T  8297836 taagggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgca 8297933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 49949971 - 49950036
Alignment:
Q  290 aaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattcttt 355  Q
    |||| ||||||| |||||||||| ||| |||||| ||||||||| |||||||||||||||||||||    
T  49949971 aagggtcttgtttacgagtgtctccggagcactcattaaacatgttaaattaagtaattattcttt 49950036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 387
Target Start/End: Original strand, 17970800 - 17970875
Alignment:
Q  314 cggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag--tttcaatttccaatgcact 387  Q
    |||||||||| |||| |||| |||||||||||||||||| || ||||| ||||||  |||||||||||||||||||    
T  17970800 cggggcactctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgcact 17970875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 21687724 - 21687615
Alignment:
Q  291 aggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagt-ttcaatttccaatgcactta 389  Q
    ||||||||||||||||||| |  | |||||||| |||| | | |||| |||||||||  |||||||| ||| ||||||| |||||||| ||||||||||     
T  21687724 aggatcttgttaacgagtgccc-ctgggcactctttaagctttctaagttaagtaatatttctttaataatatcaaagtgttcaattttcaatgcacttt 21687626  T
Q  390 attacacaaac 400  Q
    |||||||||||    
T  21687625 attacacaaac 21687615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 40252637 - 40252703
Alignment:
Q  305 gagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||||||| ||||| ||||||||  |||||||||||||| || ||||||||||| |||||||    
T  40252637 gagtgtcttcgggacactctttaaacatattaaattaagtaattgttatttaaaaatgttaaagttt 40252703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 21241119 - 21241191
Alignment:
Q  316 gggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcact 387  Q
    |||||||| ||||||||| ||||||||| ||| ||| ||||||||| ||||| ||| ||||||||||||||||    
T  21241119 gggcactctttaaacatgttaaattaagaaatgattttttaaaaatatcaaaattttcaatttccaatgcact 21241191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 47937835 - 47937910
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||||||||||   ||| | |||| |||||||| |||||||| |||||||||||||||||| ||||||||||    
T  47937835 tcttgttaacgagtgtgc-cggagtactctttaaacatactaaattatgtaattattctttaaaaaagtcaaagttt 47937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 48097920 - 48097988
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||||||||||||||||||| ||| |||||  ||||  || |||||||||| ||||||||||||||||    
T  48097920 ggatcttgttaacgagtgtctccggagcactttttaagtattctaaattaagaaattattctttaaaaa 48097988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 22889236 - 22889323
Alignment:
Q  300 ttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcac 386  Q
    |||||| ||| ||| ||||||||| |||||| | ||||||||||||||| || ||||||||||| |||  ||||||||| ||||||||    
T  22889236 ttaacgggtgactttggggcactctttaaactttctaaattaagtaattgttttttaaaaatgttaaatttttcaattttcaatgcac 22889323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 22940900 - 22940987
Alignment:
Q  300 ttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcac 386  Q
    |||||| ||| ||| ||||||||| |||||| | ||||||||||||||| || ||||||||||| |||  ||||||||| ||||||||    
T  22940900 ttaacgggtgactttggggcactctttaaactttctaaattaagtaattgttttttaaaaatgttaaatttttcaattttcaatgcac 22940987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 27748409 - 27748475
Alignment:
Q  292 ggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaa 359  Q
    ||||||||||||||||||||  |||| ||||| |||||||| ||||| |||||||||||| |||||||    
T  27748409 ggatcttgttaacgagtgtca-cgggacactctttaaacattctaaactaagtaattattttttaaaa 27748475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 23614626 - 23614692
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatgcacttaattacacaaac 400  Q
    ||||||||| |||||||| |||||||| || ||||||||||||| |||| ||||| |||||| ||||    
T  23614626 ctaaattaaataattattttttaaaaacgttaaagtttcaattttcaatacactttattacataaac 23614692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 35153262 - 35153328
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||||||| | |||||||||||||||||| |||| ||||||||| |||||||||| ||| |||||||    
T  35153262 taaattaaatcattattctttaaaaatgttaaagttttcaattttcaatgcactttattgcacaaac 35153328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 7852675 - 7852614
Alignment:
Q  299 gttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||||||||||||||| | ||||| |||| ||| ||||||| |||||||||||||| ||||    
T  7852675 gttaacgagtgtcttcgagacactctttaagcatcctaaatttagtaattattcttttaaaa 7852614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 31262910 - 31262962
Alignment:
Q  318 gcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||| |||| ||| |||||||||||||||||| |||||||||||||||||||    
T  31262910 gcactctttaagcattctaaattaagtaattatt-tttaaaaatgtcaaagttt 31262962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 20394598 - 20394674
Alignment:
Q  284 taaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||| | |||||||||||||||| | | |||||| |||| ||| | ||||| |||||||||||||| ||||    
T  20394598 taaaataagggttttgttaacgagtgtctccagagcactctttaagcatcccaaatttagtaattattcttttaaaa 20394674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 36876162 - 36876087
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaaac 400  Q
    |||| ||||||||||||||||| |||||||| ||||||| || | |||||||||||||| || || |||||||||||    
T  36876162 ttaagcatgctaaattaagtaactattcttttaaaatgtaaatgttttcaatttccaataca-ttgattacacaaac 36876087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 37461607 - 37461532
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||||||||| ||  | || ||||||| |||||||||||||||||||||||||   ||| |||||||||||||||    
T  37461607 tcttgttaacgaatgaatccgaggcactctttaaacatgctaaattaagtaatta-aattttaaaatgtcaaagttt 37461532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 40173589 - 40173537
Alignment:
Q  319 cactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||| |||||||| |||||||||||||| |||| |||||||||| |||||||    
T  40173589 cactctttaaacattctaaattaagtaatcattcattaaaaatgttaaagttt 40173537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 45743326 - 45743362
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||| |||||||||||||||||||||||||||    
T  45743326 taaattaagaaattattctttaaaaatgtcaaagttt 45743362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 54700977 - 54700913
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaa 359  Q
    ||||||||||||||||| ||||| ||||| |||| |||  |||| ||||||||||||||| ||||    
T  54700977 tcttgttaacgagtgtcatcgggacactctttaagcattttaaaataagtaattattcttaaaaa 54700913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 3179103 - 3179036
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaagttt-caatttccaatgcacttaattacacaaac 400  Q
    |||||| ||||||||| | |||||||| || ||||||| ||||||||||| ||||| |||||||||||    
T  3179103 ctaaatcaagtaattaatttttaaaaaagttaaagttttcaatttccaatacactttattacacaaac 3179036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 21240659 - 21240706
Alignment:
Q  314 cggggcactccttaaacatgctaaattaagtaattattctttaaaaat 361  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||||    
T  21240659 cggggcattctttaaacatgctaaattaagaaattattatttaaaaat 21240706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 49795116 - 49795207
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagtttcaatttccaatgcac 386  Q
    ||||||||||||||| | | ||||||||| |||| ||| |||||| ||||||||||| ||| ||| |   ||| ||||||||| ||||||||    
T  49795116 tcttgttaacgagtgccctgggggcactctttaagcatactaaataaagtaattatttttttaaatttaaaaattttcaattttcaatgcac 49795207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 383
Target Start/End: Original strand, 2063434 - 2063535
Alignment:
Q  282 attaaaataaggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttcca 380  Q
    ||||| ||| || ||||||||||||||| || | || ||||| |||| |||||||||||| | | |||||||||||||| ||||||   |||||||||||    
T  2063434 attaatatatgggtcttgttaacgagtg-ctcccggacactctttaagcatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttcca 2063532  T
Q  381 atg 383  Q
    |||    
T  2063533 atg 2063535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 38682095 - 38682021
Alignment:
Q  325 ttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcacttaattacacaa 398  Q
    ||||||||  ||| ||||||||||| ||||||||| ||| |||| ||||||||| |||| ||||| |||||||||    
T  38682095 ttaaacattttaagttaagtaattaatctttaaaattgttaaagttttcaattttcaatacactttattacacaa 38682021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 53622297 - 53622379
Alignment:
Q  318 gcactccttaaacatgctaaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaattacacaaa 399  Q
    |||||| ||||||||  |||||||||||||| || ||| |||||||| ||| ||||||||||||   ||||| ||||||||||    
T  53622297 gcactctttaaacatcttaaattaagtaattttttttttaaaatgtcaaaattttcaatttccagctcactttattacacaaa 53622379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 54552879 - 54552809
Alignment:
Q  297 ttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    ||||||||||||| || |||||||||| ||||  || ||||||| || || ||||||||||||| ||||||    
T  54552879 ttgttaacgagtgcctccggggcactctttaagaatcctaaatttagaaaatattctttaaaaaggtcaaa 54552809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 367
Target Start/End: Original strand, 4391978 - 4392011
Alignment:
Q  334 ctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    ||||||| ||||||||||||||||||||||||||    
T  4391978 ctaaatttagtaattattctttaaaaatgtcaaa 4392011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 20113874 - 20113793
Alignment:
Q  83 tttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtccgggcgagtgtccgaggtcg 164  Q
    |||||||||| |||||| |||| ||||||| |  | ||| |||||||  ||| |||||||| |||||||||||||| |||||    
T  20113874 tttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcg 20113793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 42370448 - 42370383
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    |||||||||||||||| || ||||||||| |||| ||| | |||  ||| ||||||||||||||||    
T  42370448 tcttgttaacgagtgtttttggggcactctttaagcataccaaaacaagcaattattctttaaaaa 42370383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Complemental strand, 46010699 - 46010634
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaa 360  Q
    ||||| |||||||| ||| ||| |||||| ||||| ||  ||| ||||||||||||||||||||||    
T  46010699 tcttgataacgagtatctccggtgcactctttaaatattttaagttaagtaattattctttaaaaa 46010634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 49623041 - 49622976
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtc-aaagtttcaatttccaatgcacttaattacacaaa 399  Q
    ||||||||||||||||||  |||||||||| ||| |||||||||| |||  |||| ||||||||||    
T  49623041 taaattaagtaattattccataaaaatgtcaaaattttcaatttctaatatactttattacacaaa 49622976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 28005378 - 28005306
Alignment:
Q  295 tcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa 367  Q
    |||||||||||||||| | || || |||| |||||||| ||||| |||| ||||||  |||||||| ||||||    
T  28005378 tcttgttaacgagtgtatccgaggtactctttaaacatactaaaataagcaattatcttttaaaaaagtcaaa 28005306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 50617492 - 50617560
Alignment:
Q  320 actccttaaacatgctaaattaagtaattattctttaaaaatgtcaaa-gtttcaatttccaatgcact 387  Q
    |||| ||||||||  ||||||||||||||||| ||| |||||||||||  |||||||||  ||||||||    
T  50617492 actctttaaacattataaattaagtaattatttttttaaaatgtcaaacttttcaatttttaatgcact 50617560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 26669 - 26777
Alignment:
Q  291 aggatcttgttaacgagtgtcttcggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaag-tttcaatttccaatgcactta 389  Q
    |||||||| ||||| |||| || | |||||||| |||| |||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||| |     
T  26669 aggatcttattaacaagtg-ctcccgggcactctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattttcaatgcac-tg 26766  T
Q  390 attacacaaac 400  Q
    |||||||||||    
T  26767 attacacaaac 26777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 46360 - 46493
Alignment:
Q  51 gcgcttgtaaaaatattgagtttgcccaatt-----ctttttaagtgggttaatgggctattgggttaagtcaaatataaagaaggtattgattgagtcc 145  Q
    |||| ||||||||||||||||||| ||||||      ||||||||||||||||||  ||||| ||||  |  |||||||||||| |||| ||||||| ||    
T  46360 gcgcgtgtaaaaatattgagtttgtccaattttttattttttaagtgggttaatgaactatttggttgggcaaaatataaagaaagtatcgattgagccc 46459  T
Q  146 gggcgagtgtccgaggtcgtcgggtggtggctcc 179  Q
    |||| | || ||| ||||  | ||||||||||||    
T  46460 gggcaaatgcccggggtcaccaggtggtggctcc 46493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 5752 - 5809
Alignment:
Q  314 cggggcactccttaaacatgctaaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    |||||||||| ||||  ||  |||||||||||||| ||||||||||||||||||||||    
T  5752 cggggcactctttaagaattttaaattaagtaatttttctttaaaaatgtcaaagttt 5809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 19578 - 19614
Alignment:
Q  335 taaattaagtaattattctttaaaaatgtcaaagttt 371  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19578 taaattaagtaattattctttaaaaatgttaaagttt 19614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University