View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17011_low_4 (Length: 328)
Name: NF17011_low_4
Description: NF17011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17011_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 12754896 - 12755208
Alignment:
| Q |
3 |
ggtagataatactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatcaaatgtgtgtttggtgtttaacatgtgtcggtgatca |
102 |
Q |
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| T |
12754896 |
ggtagataacactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatcaaaagtgtgtttggtgtctaacatgcgttggtgaaca |
12754995 |
T |
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| Q |
103 |
acaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgtgt---gtatcggacatgtgtcattcgacaacattaacacaata |
199 |
Q |
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| T |
12754996 |
acaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgtgtctggtatcggacatgtgtcattcaacaacattaacacaata |
12755095 |
T |
|
| Q |
200 |
ctaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctgacacatgtaagagtctattaatcagtgtctacatgtcagtgtc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
12755096 |
ctaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaagtatctgacacatgta--agtctattaatcagtgcctacatgtcagtgtc |
12755193 |
T |
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| Q |
300 |
gtgttagtgcttcgt |
314 |
Q |
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| T |
12755194 |
gtgttagtgcttcgt |
12755208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 297
Target Start/End: Original strand, 12817857 - 12818152
Alignment:
| Q |
3 |
ggtagataatactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatcaaatgtgtgtttggtgtttaacatgtgtcggtgatca |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||| || |
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| T |
12817857 |
ggtagataacactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatcaaaagtgtgtttggtgtctaacatgcgttggtgaaca |
12817956 |
T |
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| Q |
103 |
acaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgtgt---gtatcggacatgtgtcattcgacaacattaacacaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
12817957 |
acaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgtgtctggtatcggacatgtgtcattcaacaacattaacacaata |
12818056 |
T |
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| Q |
200 |
ctaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctgacacatgtaagagtctattaatcagtgtctacatgtcagtg |
297 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
12818057 |
ctaacacaaaacttatgtagcatacacaattcagatcaattgtatgtcaagtatctgacacatgta--agtctattaatcagtgcctacatgtcagtg |
12818152 |
T |
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