View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17011_low_5 (Length: 317)

Name: NF17011_low_5
Description: NF17011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17011_low_5
NF17011_low_5
[»] chr2 (10 HSPs)
chr2 (105-299)||(8978991-8979187)
chr2 (145-299)||(8973868-8974021)
chr2 (44-244)||(8995549-8995740)
chr2 (44-104)||(8987747-8987807)
chr2 (145-244)||(9015963-9016062)
chr2 (40-107)||(9016138-9016205)
chr2 (145-233)||(9019988-9020076)
chr2 (37-105)||(9020136-9020204)
chr2 (42-99)||(9030086-9030143)
chr2 (105-149)||(8972980-8973024)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 105 - 299
Target Start/End: Complemental strand, 8979187 - 8978991
Alignment:
Q  105 tcataacaagtcattgcacttgcaccagttctcgaaaaaatcaagtctgcaacatcatatgtagacattaaataacagttgagcggcaatggtaatggcc 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8979187 tcataacaagtcattgcatttgcaccagttctcgaaaaaatcaagtctgcaacatcatatgcagacattaaataacagttgagtggcaatggtaatggcc 8979088  T
Q  205 attaatggataggtaaaactaaagttgaagaattgaagataa--agctgatcaataatgcataattttcagattatagtacagacatatgcacctag 299  Q
    ||||||| |||||||||||||||||||||||||| |||||||  || |  | ||||||||||||||||||||||||||||||| |||||||||||||    
T  8979087 attaatgcataggtaaaactaaagttgaagaattaaagataaacaggttcttaataatgcataattttcagattatagtacaggcatatgcacctag 8978991  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 8974021 - 8973868
Alignment:
Q  145 tcaagtctgcaacatcatatgtagacattaaataacagttgagcggcaatggtaatggccattaatggataggtaaaactaaagttgaagaattgaagat 244  Q
    ||||||||||| ||||||||  |||||||| | ||| || ||| || |||||||  ||||||||||| | ||||||||||||||||||||| ||||||||    
T  8974021 tcaagtctgcagcatcatatacagacattagaaaacggtggagtggtaatggtagcggccattaatgcaaaggtaaaactaaagttgaagagttgaagat 8973922  T
Q  245 aa--agctgatcaataatgcataattttcagattatagtacagacatatgcacctag 299  Q
    ||  ||    | ||||||||||||||||||   ||||| ||||||||||||||||||    
T  8973921 aaccaggctcttaataatgcataattttca---tataggacagacatatgcacctag 8973868  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 244
Target Start/End: Complemental strand, 8995740 - 8995549
Alignment:
Q  44 ctaatcataaataaagaaacataataaatgaaagaaacaacaataactctagatctaacaatcataacaagtcattgcacttgcaccagttctcgaaaaa 143  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||              ||||||||||| |||| ||| |||  |||| |||| |    
T  8995740 ctaagcataaataaagaaacataatgaatgaaagaaacaacaataactc--------------ataacaagtcactgcagttggaccgtttctagaaaca 8995655  T
Q  144 atcaagtc-----tgcaacatcatatgtagacattaaataacagttgagcggcaatggtaatggccattaatggataggtaaaactaaagttgaagaatt 238  Q
    ||||||||     |||| ||||||||   || |||| | ||| |||||| ||  |||||| |||||||||||| |||| |||||||||||||||||||||    
T  8995654 atcaagtcaagtctgcagcatcatatactgaaattagaaaacggttgagtggtgatggtagtggccattaatgcatagataaaactaaagttgaagaatt 8995555  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 8987807 - 8987747
Alignment:
Q  44 ctaatcataaataaagaaacataataaatgaaagaaacaacaataactctagatctaacaa 104  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  8987807 ctaagcataaataaagaaacataatgaatgaaagaaacaacaataacttaagatctaacaa 8987747  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 9016062 - 9015963
Alignment:
Q  145 tcaagtctgcaacatcatatgtagacattaaataacagttgagcggcaatggtaatggccattaatggataggtaaaactaaagttgaagaattgaagat 244  Q
    ||||||||||| ||||||||||||| |||| | ||| || ||| || |||||||  ||||||| ||| |||||||| |||||||||||||||||| ||||    
T  9016062 tcaagtctgcagcatcatatgtagatattagaaaacggtggagtggtaatggtatcggccattcatgcataggtaagactaaagttgaagaattgtagat 9015963  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 9016205 - 9016138
Alignment:
Q  40 agttctaatcataaataaagaaacataataaatgaaagaaacaacaataactctagatctaacaatca 107  Q
    |||||||| ||||||||||||||||||   ||||||| ||||| ||||||||| ||||||||||||||    
T  9016205 agttctaagcataaataaagaaacatatggaatgaaataaacaccaataactcaagatctaacaatca 9016138  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 9020076 - 9019988
Alignment:
Q  145 tcaagtctgcaacatcatatgtagacattaaataacagttgagcggcaatggtaatggccattaatggataggtaaaactaaagttgaa 233  Q
    |||||| |||| ||||||||| |||||||| | ||| || ||| || |||||||  ||||||||||| | |||||||||||||||||||    
T  9020076 tcaagtatgcagcatcatatgcagacattagaaaacggtggagtggtaatggtagcggccattaatgcaaaggtaaaactaaagttgaa 9019988  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 9020204 - 9020136
Alignment:
Q  37 actagttctaatcataaataaagaaacataataaatgaaagaaacaacaataactctagatctaacaat 105  Q
    ||||||||||| ||||||| |||||||||||  ||||||||||||||||||| ||   |||||||||||    
T  9020204 actagttctaagcataaattaagaaacataaggaatgaaagaaacaacaatagcttaggatctaacaat 9020136  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 9030143 - 9030086
Alignment:
Q  42 ttctaatcataaataaagaaacataataaatgaaagaaacaacaataactctagatct 99  Q
    |||||| ||||||||||||||||||   ||||||| |||||| |||||||| ||||||    
T  9030143 ttctaagcataaataaagaaacatacggaatgaaataaacaataataactcaagatct 9030086  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 8973024 - 8972980
Alignment:
Q  105 tcataacaagtcattgcacttgcaccagttctcgaaaaaatcaag 149  Q
    ||||||||||||| ||||||||||||| |||| |||| |||||||    
T  8973024 tcataacaagtcactgcacttgcaccatttctagaaacaatcaag 8972980  T

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