View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17012_high_3 (Length: 454)

Name: NF17012_high_3
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17012_high_3
NF17012_high_3
[»] chr5 (3 HSPs)
chr5 (13-454)||(2563765-2564220)
chr5 (136-303)||(2573777-2573944)
chr5 (381-452)||(2573616-2573687)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 2564220 - 2563765
Alignment:
Q  13 catcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaacta---atgtttagtaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  2564220 catcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaactactaatgtttagtaaaa 2564121  T
Q  110 gatcattagtttgttatatgtatctgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcc 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2564120 gatcattagtttgttatatgtatgtgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcc 2564021  T
Q  210 tgattccaaccttggttatctgtgatgtacttcaagtatttgctttctccactggccttgtataaccaagcagcagcccataatagttcatcctcttggt 309  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  2564020 tgattccaaccttggttatctgtgatgtacttcaagtacttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttcat 2563921  T
Q  310 acacaa----------ccatatataaatgaatgatactaagaagttataattagtttgtaaatattctc-tttccacaagctgtaatttcttacttggta 398  Q
    ||||||           ||   |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2563920 acacaattcaaaaatcacaaccataaatgaatgatactaagaagttataactagtttgtaaatattctcttttccacaagctgtaatttcttacttggta 2563821  T
Q  399 accagagtacgagcagtagaatggacaagaatctgtgtaggtgcctctatacttgt 454  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2563820 accagagtacgagcagtagaatggacaagaacctgtgtaggtgcctctatacttgt 2563765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 136 - 303
Target Start/End: Complemental strand, 2573944 - 2573777
Alignment:
Q  136 taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgat 235  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||| ||| ||||||||||||||  ||||||    
T  2573944 taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgat 2573845  T
Q  236 gtacttcaagtatttgctttctccactggccttgtataaccaagcagcagcccataatagttcatcct 303  Q
    |||| |||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| ||||||||    
T  2573844 gtacgtcaagtatttgctttccccactagccttgtatagccaagtagcagcccataataattcatcct 2573777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 2573687 - 2573616
Alignment:
Q  381 gtaatttcttacttggtaaccagagtacgagcagtagaatggacaagaatctgtgtaggtgcctctatactt 452  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| | | |||  |||||||||||||    
T  2573687 gtaatttcttacttggtaaccagagtatgagcagtagaatgggcaagaacccgagtaactgcctctatactt 2573616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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