View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17012_high_4 (Length: 313)
Name: NF17012_high_4
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17012_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 2563515 - 2563793
Alignment:
| Q |
19 |
ccaagaacactttacaagattgatgctaattcccctggaactgaggctgcagctgaggctgctgctgcactttcagctgcttcaattgtctttaagaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2563515 |
ccaagaacactttacaagattgatgctaattcccctggaactgaggctgcagctgaggctgctgctgcactttcagctgcttcaattgtctttaagaaaa |
2563614 |
T |
|
| Q |
119 |
aagataccaaatattcgttgaagctattaagacattcaaaatctgtgagcaattcaagtattattatatagtttattaataattgatcaattagttaaac |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2563615 |
aagataccaaatattcgtcgaagctattaagacattcaaaatctgtgagcaattcaag---tattatatagtttat---taattgatcaattagttaaac |
2563708 |
T |
|
| Q |
219 |
aaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacaggttct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2563709 |
aaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacaggttct |
2563793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 2573286 - 2573445
Alignment:
| Q |
17 |
caccaagaacactttacaagattgatgctaattcccctggaactgaggctgcagctgaggctgctgctgcactttcagctgcttcaattgtctttaagaa |
116 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
2573286 |
caccaagaacaacttacaagattgattcaaattcccctggaactgaggctgcagctgaggctgctgccgctctttctgctgcttcaattgtctttaagaa |
2573385 |
T |
|
| Q |
117 |
aaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgagcaattcaag |
176 |
Q |
| |
|
|| ||||| ||| ||||| | ||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
2573386 |
aacagatatcaattattcatccaagctattaagccagtcaaaatctgtaagcaattcaag |
2573445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 2573586 - 2573628
Alignment:
| Q |
247 |
tatgttttgtagttgtttgattttgctgacaagtatagaggca |
289 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
2573586 |
tatgtttcgcagttgtttgattttgctgataagtatagaggca |
2573628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University