View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17012_low_1 (Length: 558)
Name: NF17012_low_1
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17012_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 471
Target Start/End: Complemental strand, 4266867 - 4266407
Alignment:
| Q |
11 |
caaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatgtctaccttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4266867 |
caaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatatctaccttttt |
4266768 |
T |
|
| Q |
111 |
catggtacaaaggttcttttatagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatcaccc |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266767 |
catggtacaaaggttcttttagagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatcaccc |
4266668 |
T |
|
| Q |
211 |
tttattttcattacatagtgattattaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggttaagt |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266667 |
tttattttcattacatagtgattgttaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggttaagt |
4266568 |
T |
|
| Q |
311 |
tatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcttgcggtgtagagcgtacattgcttgcaccttca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4266567 |
tatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcctgcggtgtagagcgtacattgcttgcaccttca |
4266468 |
T |
|
| Q |
411 |
tattagtccaatctaccaataattttacatgagtataatctattacctataatgatgagag |
471 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4266467 |
tattagtccaatctaccaataatcttacatgagtataatctattacctataatgatgagag |
4266407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 499 - 542
Target Start/End: Complemental strand, 4266390 - 4266347
Alignment:
| Q |
499 |
gaaaacttttaagatataaatcaaattttatggggagaattagt |
542 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
4266390 |
gaaaacttttaagatataaatcaaattttctggagagaattagt |
4266347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University