View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17012_low_2 (Length: 540)
Name: NF17012_low_2
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17012_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 376 - 529
Target Start/End: Original strand, 8467399 - 8467552
Alignment:
| Q |
376 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttccatttgtc |
475 |
Q |
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| T |
8467399 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttgcatttgtc |
8467498 |
T |
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| Q |
476 |
ttcctcttctggttttgttgcttcttctccgcaacggagtcttttttctccttc |
529 |
Q |
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| T |
8467499 |
ttcctcttctggttttgttgcttcttctccgcaacagagtcttttttctccttc |
8467552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 8466623 - 8466743
Alignment:
| Q |
22 |
tagatatgagtgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgag |
121 |
Q |
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| T |
8466623 |
tagatatgaatgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgag |
8466722 |
T |
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| Q |
122 |
ttaagatgctcagataaatta |
142 |
Q |
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| T |
8466723 |
ttaagatgctcagataaatta |
8466743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
| Q |
267 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
346 |
Q |
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| T |
8467320 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
8467399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
| Q |
173 |
attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
251 |
Q |
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| T |
8467198 |
attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
8467276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
| Q |
138 |
aattattaatacatgcactttgattgtcacagtgaatta |
176 |
Q |
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| T |
8467152 |
aattattaatacttgcactttgattgtcatagtgaatta |
8467190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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