View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17012_low_4 (Length: 402)
Name: NF17012_low_4
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17012_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Complemental strand, 49642980 - 49642606
Alignment:
| Q |
5 |
gagaagcaaaggcagcgtagtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgag |
104 |
Q |
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| T |
49642980 |
gagaatcaaaggcagcgtagtaaggaagataaacggcgttagcggttttaggatcttccgttaagcatggatattctaacatacgacgatggaaaatgag |
49642881 |
T |
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| Q |
105 |
ttcaagcatggatgggtcggttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctagg |
204 |
Q |
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| T |
49642880 |
ttcaagcatggatgggtcggttcggtaccaactatgggaacggttatgggttttttgacccaaaccatggtttgctaagtaaggacataaatcgtctagg |
49642781 |
T |
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| Q |
205 |
aatgtgtattctgaacaatttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttg |
304 |
Q |
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| T |
49642780 |
aatgtgtattctgaacaatttgagagtagatctaggttgaattttggtggtaattttcttatgtggatccaacgttgttcgcactcattttctgttgttg |
49642681 |
T |
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| Q |
305 |
ttgatttaaggtttttattttcttcggatttggttggattcaagaggaggaggaagatagtgatgatggagatgt |
379 |
Q |
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| T |
49642680 |
ttgatttaaggtttttattttcttcggatttggttggattcaagaggaggaggaagatagtgatgatggagatgt |
49642606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 6623170 - 6623275
Alignment:
| Q |
55 |
ggatcttccgttaagcatgg--atattct-aacatacgacgatggaaaatgagttcaagcatggatgggtcggttcggtaccaactatgggaacggttat |
151 |
Q |
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| T |
6623170 |
ggatcttttgttaagcatggggatattcttaacatacggggattgaatatgagttcaagcatgtatgggtcgatt-tgtgtcaactatgggaactgttat |
6623268 |
T |
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| Q |
152 |
gggtttt |
158 |
Q |
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||||||| |
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| T |
6623269 |
gggtttt |
6623275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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