View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17012_low_6 (Length: 242)
Name: NF17012_low_6
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17012_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2564426 - 2564197
Alignment:
| Q |
1 |
catggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaatcaaatgctaattcagctcattcca |
100 |
Q |
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| T |
2564426 |
catggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataa------------taattcagctcattcca |
2564339 |
T |
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| Q |
101 |
tcaatagtgaattaatgttgattgaaataagattgacctataagtaaatatataccaggagnnnnnnnaatctgtagagagtaacttcctggcatcaaag |
200 |
Q |
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| T |
2564338 |
tcaataatgaattaatgttgattgaaataagattgacctataagtaaatatataccaggtgtttttttaatctgtagagagtaacttccttgcatcaaag |
2564239 |
T |
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| Q |
201 |
cacatataaatgattcaccatcactatgaatctttgctaagt |
242 |
Q |
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| T |
2564238 |
cacatataaatgattcaccatcactatgaatctttgctaagt |
2564197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2574321 - 2574246
Alignment:
| Q |
1 |
catggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaat |
76 |
Q |
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| T |
2574321 |
catggttgaggttgtggtatattgcaaattactgctatctctaatatacagaagcccacctgagttaacaataaat |
2574246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 2574148 - 2574081
Alignment:
| Q |
173 |
tgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaa |
240 |
Q |
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| T |
2574148 |
tgtagagagctacttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaa |
2574081 |
T |
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