View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17012_low_7 (Length: 227)
Name: NF17012_low_7
Description: NF17012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17012_low_7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 2564669 - 2564445
Alignment:
| Q |
4 |
tcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatctttagttataataattatgaaccaaaataataaagaaatgggctta |
103 |
Q |
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| T |
2564669 |
tcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaatgggctaa |
2564570 |
T |
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| Q |
104 |
atgtctta-gagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaacttggtagagccacaatgaattccat |
202 |
Q |
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| T |
2564569 |
atgtcttaagagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccat |
2564470 |
T |
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| Q |
203 |
caatatgatttttgtttaggatttt |
227 |
Q |
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|||||| |||||||||||||||||| |
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| T |
2564469 |
caatattatttttgtttaggatttt |
2564445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 2574563 - 2574510
Alignment:
| Q |
4 |
tcatgggattgttacctagtatgtagtccacctatgt--tatgtacacattcaa |
55 |
Q |
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| T |
2574563 |
tcatgggattgtttcctagtatgtagtccacctatgtaatatgtacacattcaa |
2574510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 2574433 - 2574340
Alignment:
| Q |
134 |
atacctgtgattttgcaaaggctttaatttcagaggaggtgaacttggtagagccacaatgaattccatcaatatgatttttgtttaggatttt |
227 |
Q |
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| T |
2574433 |
atacctgtaattttgcaaaggctctaatctcagagggtgaaaaatgggcagagccacagtgtattccatcaatatggtttttgtttaagatttt |
2574340 |
T |
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